Chryseobacterium nakagawai: EG343_23590
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Entry
EG343_23590 CDS
T06300
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cnk
Chryseobacterium nakagawai
Pathway
cnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG343_23590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnk03019
]
EG343_23590
Enzymes [BR:
cnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG343_23590
Messenger RNA biogenesis [BR:
cnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG343_23590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZA93374
UniProt:
A0A3S4TKG1
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All DBs
Position
5160269..5161621
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AA seq
450 aa
AA seq
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MEKLTFADFDLPVKILDVLADLELFEPTPIQEKSLKPILSGRDVMGIAQTGTGKTLAYLL
PVLKTWKYSKTGNPTVLVLVPTRELVVQVTEILEKLTENITARVIGIYGGKNINTQKLLF
NDGCDILVGTPGRVMDLSIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMKEKRQ
NILFSATMTEAVDDMLDEYFASPIEISLAKSGTPLEKIEQTAYKVENFNTKIDLLEHLLK
NNADMSKVLIFNNNKKHADLLFTKIDELFPEQFDVIHSNKSQNYRLKAMKSFENEEVRGL
ITTDVMARGLDISNITHVINFETPDIPEQYIHRIGRTGRADKEGKAMTFVTKKEEPLLLD
IELLMDKDLKFNDFPEDVKINPIKIASEKDEVVMKNPAQVKLNEGGGAFHEKKAKNTKEN
WGGPSKRKAPKKFGTNRAQQKAISKSKRKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactcacttttgcagattttgacctgccggttaaaattcttgatgttttagca
gatttagaattatttgagcctaccccgattcaggagaagagtttaaagcctatcctttca
gggagagatgtaatgggaattgcacaaaccggaaccgggaaaaccctggcttatcttttg
cctgttctgaagacttggaaatacagtaaaacaggaaatccaacggttctagtacttgtt
cctacaagagaattggtggtacaggtaacagaaattcttgagaaactgactgaaaatatt
acagcaagagttattggaatatatggtggtaaaaacatcaacacacagaaacttttattc
aatgacgggtgtgatattttagtaggaacaccaggtagagtgatggacctttccatagac
aatgctatttcccttaaagaagttcagaagcttatcattgatgaatttgatgaaatgctt
aaccttggattcagaccgcaattgactcacatttttgaaatgatgaaagagaagagacag
aatattcttttctcagcaacaatgactgaagctgtagatgatatgctagatgaatatttt
gcaagtcctatagaaatttcattggcaaaatcaggaactccgcttgaaaaaattgagcag
actgcctataaagttgaaaatttcaataccaagatcgaccttcttgagcatttattaaaa
aataatgcggacatgtctaaggtgttgatttttaataataataaaaaacatgcagacctg
cttttcactaagattgatgagctttttcctgagcagtttgatgtgattcactccaataag
tctcaaaactataggcttaaggccatgaagagctttgaaaatgaagaggtaagaggtttg
attacaacagatgtaatggctagaggtcttgatatttcaaatattacgcatgttatcaac
tttgaaacccctgatatcccggaacagtatatccacagaatcggtagaacaggtagagca
gataaagaaggtaaggcaatgacttttgttactaaaaaagaagagcctttacttttggat
atagagcttttaatggataaagatctaaagtttaacgacttcccggaagatgttaaaatt
aatccgatcaaaattgcttctgagaaagatgaagtagtaatgaaaaatcctgcacaggta
aaactgaacgagggtggaggagctttccatgagaaaaaagcgaaaaataccaaagaaaac
tggggtggtccttcaaaaagaaaagcacctaagaagtttggaaccaatagagcacagcag
aaagcaatctctaaatcgaagagaaaaaaataa
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