Cobetia sp. AM6: CLAM6_04890
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Entry
CLAM6_04890 CDS
T08724
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CLAM6_04890 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_04890 (recD)
Enzymes [BR:
cobe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CLAM6_04890 (recD)
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CLAM6_04890 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
RecD_N
SH3_13
AAA_22
Helicase_RecD
AAA_28
UvrD_C
UvrD-helicase
T2SSE
AAA_16
nSTAND3
NTPase_1
TrwB_AAD_bind
CbiA
SLFN-g3_helicase
AAA_5
Motif
Other DBs
NCBI-ProteinID:
BBO55178
UniProt:
A0A5K7Y2C9
LinkDB
All DBs
Position
577072..579216
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AA seq
714 aa
AA seq
DB search
MSDTMSVPTQQLSAAPDASTADTLLATLGLWVELGWLRRVDAHLVRFMARHVPEAPASVL
LAAALASHQLGRGHVCLSLSRALAEPRATLSLPPLEQSEAHLAEVSVALPEAFLADLDAS
RWAEQLAASRLVSVLAQADSPAGHLPLRPLVLVGERLYLRRYWQAEREVAAGLRARMGPS
EEGETRVSDALGERLCELFASNQPDPHGEPDWQKLACALALRQRLTVISGGPGTGKTTTV
TRLLALLQAQALVGGADGAEGELESAETGHPHERRALDIRLVAPTGKAAARLSESIRGAV
AKLEVPDAVRAAIPREASTVHRLLGARPDSRHFRHHAGNPLALDLLVVDEASMVDLDLMA
ALLGALPAHARLILLGDKDQLASVEAGAVLGDLCEHALPPRYSPALCADLSRLTCETLEQ
AIAAPDGQDLEETSATRGRLADHVVVLQKSYRFSADSGIGALARASNAGDRQALRDVWKA
GYRDIAWLKLSGPEDRDLEKLVVNGYRPALEAVRERRPAREVIDLLLEFQLLCALRRGPY
GVDGLNQRVARVLMRRGLIADERGWYAGRPVMVTRNDRALGLYNGDVGITLPDPAAGGRL
RVFFPVEEEATPDTERDEQDTDIQRFHRGVRAVLPSRLEAVETVFAMTVHKSQGSEFRHV
LFVLPEGANPILTRELVYTGITRAKSRVTLAGTRRETLEGAIERRVVRASGLVL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaccatgtctgtgccaacacagcagctcagcgctgcccctgacgcctcgact
gccgacaccctgctcgccacgctcggcctgtgggtggagctgggctggcttaggcgcgtc
gatgcccatctggtgcgcttcatggcgcgccatgtgccggaggccccggccagcgtattg
ctggcggccgcgttggccagccaccagctgggacgcgggcatgtgtgcctgtcgctgtcg
cgggcgctggccgagccacgcgcgaccctgtcgttgccgccgctggagcagtccgaggcg
catctggccgaggtcagcgtggccctgccggaagccttcctggcggatctcgatgccagc
cgctgggccgagcagctggcggcatcgcggctggtcagcgtgctggcgcaggccgattcc
ccggcaggccatctgccgctgcgcccgctggtgctggtgggcgagcgcctctatctgcgc
cgttactggcaggccgagcgtgaagtcgcggcggggctgcgtgcgcggatggggccgagc
gaggagggcgagacgcgggtcagcgatgcgctgggcgagcgcctgtgcgagctgttcgcc
agcaatcagccggacccgcacggcgagccggactggcagaagctggcctgcgccctggcg
ttgcgtcagcgcttgacggtgatctccggcggccccggcaccggcaagaccaccaccgtc
acgcgactgttggcgctgttgcaggctcaggcgctggtgggtggcgctgacggtgcagag
ggcgagctggagagcgctgagacaggccatccgcacgagcggcgggcgctggatatccgc
ctggtcgccccgaccggcaaggcggcggcgcggctgtcggagtcgatccggggggcggtg
gcgaagctcgaggtgccagacgcggtacgcgccgccatcccgcgcgaggcaagcaccgtg
caccgcctgctgggggctcgcccggattcgcgccacttccgccatcacgcgggcaacccg
ctggcgctggacctgctggtggtggatgaggcctcgatggtcgatctcgacctgatggcc
gcactgctcggcgcgctgcccgcccacgcccgcctgattctgcttggcgacaaggaccag
ctggcctcggtggaagccggcgccgtgctgggcgatctctgcgagcatgcgctgccgccg
cgctactcaccggcattgtgtgccgacttgagccgcctgacctgcgaaacgctggaacag
gccatcgccgcgcctgatggccaggacttggaggaaacatcagcgacacgtggccgcctc
gccgatcacgtggtggtgctgcagaagagctatcgcttctctgccgacagtggcatcggc
gccctggcacgcgccagcaacgccggggatcgtcaggcgctgcgcgatgtctggaaggcc
ggttatcgcgacatcgcctggctcaagctcagtggcccggaggaccgcgatctcgagaag
ctggtagtcaatggttaccgcccggcgctggaggccgtgcgtgagcggcgtccggcgcgt
gaggtgatcgacctgctgctcgagttccagctgctgtgcgcgttgcgccgtggcccctac
ggcgtcgatggcctcaaccagcgcgtggcgcgggtgctgatgcggcgcggcctgatcgcg
gacgagcgcggctggtacgccggtcgcccggtgatggtgacgcgcaacgaccgcgcgctg
ggactctacaacggcgatgtcggcatcactctgccggaccccgctgccggcgggcgcctg
cgcgtgttcttcccggtcgaggaggaggcgacgccagacaccgagcgtgatgagcaggac
accgacatccagcgcttccaccgtggcgtgcgcgcggtattgccgtcacgcctcgaggcg
gtggagaccgtcttcgcgatgacggtccacaagtcgcagggttccgagttccgccatgtg
ttattcgtgttgcctgagggcgccaacccgattctgacccgcgagctggtctataccggc
atcacgcgggccaagtcgcgggtcacgctggcgggaacccgccgcgagacgctggaaggc
gccattgaacgacgcgtggtgagagccagcgggctggtgctctag
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