Capnocytophaga sp. oral taxon 323: AM608_05545 Help Entry AM608_05545       CDS       T04076                                  Name (GenBank) RNA polymerase subunit sigma-54   KO K03092   RNA polymerase sigma-54 factor Organism col  Capnocytophaga sp. oral taxon 323 Pathway col02020   Two-component system col02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:col00001]  09130 Environmental Information Processing   09132 Signal transduction    02020 Two-component system     AM608_05545  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     AM608_05545  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:col03021]     AM608_05545 Transcription machinery [BR:col03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      AM608_05545 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sigma54_CBD Sigma54_DBD Sigma54_AID HTH_12 LacI DUF3606 MarR Motif Other DBs NCBI-ProteinID:  ALC97146 UniProt:  A0A0M3RID3 LinkDB All DBs Position 1296655..1298124 Genome browser AA seq 489 aa AA seqDB search MLKQNLQLKLSQKLSPQQIQLMKLVQLPTLAFEQRVKQEMEENPALESGREEDDAFDEFH DEFDNSADEYNDNDVIDMDDINIDEYLSDDEIPDYRLHANNYSDDDEDHDIPFSAEVSFH QSLINQLNTFTLSDEDYLIAEFLVGSIDDTGYIRRSIQDLTDDLAFTQNIYTEEDHVEQI RQQIIFQLDPAGVGASDLQECLLIQLRRKKQTPAIELAIKMLTEAFEAFTKKHYTKLQQR FLVTEEQLKEAVQEVERLNPKPGSSYVGNNVHIEQIIPDFTVKVVDNELELSLNGRNAPE LHVSKEYSTMLDTYKKSKEKSNSQKEAVFFIKQKLDSAKWFIDAIRQRQQTLLITMNAIM EHQREYFLTGDELKIKPLILKDIADKVGMDISTVSRVASSKYVTTPYGTKLIKDFFSESM KNDQGEDVSTREIKQILQHIIAKEDKSKPLPDDELAQLLKEKGYPIARRTIAKYREQMDI PVARLRKEL NT seq 1470 nt NT seq  +upstreamnt  +downstreamnt atgctcaaacagaatttacaacttaaactctcacagaaactctcacctcagcaaatacag ctgatgaaactcgtgcaactccccactcttgcttttgaacagcgcgtgaaacaagagatg gaagaaaaccccgctttagaatcagggcgcgaagaagatgatgcttttgatgagtttcac gatgagttcgacaactctgccgatgaatataacgataacgatgtgattgatatggacgat atcaacatcgatgaatacctcagtgatgatgaaatacccgactaccgtctgcacgctaat aactacagcgacgacgatgaagatcacgatattcctttcagtgccgaggtgtcgtttcac caatcccttatcaaccaattgaacacctttaccctctccgatgaggattacttaattgct gagttccttgtgggtagcatagacgatacaggctatatacgccgttctattcaagacctt accgacgatctcgctttcacccaaaatatctataccgaagaagatcacgtagagcaaata cgccaacagattattttccaattagaccctgcaggggtaggcgcatcagacttgcaagag tgcttgctcatacaactgcgccgcaaaaaacaaacccctgctatagaattggcaatcaaa atgcttacggaagcctttgaggcattcactaaaaagcattatactaaactgcaacagcgc tttttggtaactgaagaacagctaaaagaagcggtacaagaggtagaacgcctaaaccct aaacctggaagttcttacgtgggcaacaatgtgcatatagagcaaattatccccgatttt actgtaaaggtggtagataacgagttggaactctccctcaacggacgcaatgctcctgag ctacacgtttctaaggaatacagcactatgctcgatacttataagaagagtaaagaaaag agcaattcacaaaaagaagcagtgttcttcatcaaacagaagttagattctgctaagtgg tttatagatgccattcgtcagcgacaacaaacgctcctcatcacgatgaacgccattatg gagcaccaacgcgagtacttcctcacaggtgatgagctgaaaataaaaccgcttattctc aaagatattgccgataaggtaggtatggacatctctaccgtatctcgggtagcgagtagt aaatacgtaaccaccccttacggtacaaaactcattaaagatttcttttcggaatctatg aagaacgaccaaggagaagatgtttctacccgtgaaatcaagcagatattacaacatatc atcgctaaggaagacaagagtaaacctctacccgatgatgaattggcacagcttctcaaa gagaaaggttaccccattgcgcgccgcactatcgccaaataccgagaacaaatggatata cctgtagcacgcctcagaaaagagctgtaa

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