Carica papaya (papaya): 110817850
Help
Entry
110817850 CDS
T05151
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03020
RNA polymerase
cpap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110817850
09124 Replication and repair
03420 Nucleotide excision repair
110817850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110817850
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110817850
Enzymes [BR:
cpap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110817850
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110817850
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110817850
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
110817850
NCBI-ProteinID:
XP_021902259
LinkDB
All DBs
Position
Unknown
AA seq
1018 aa
AA seq
DB search
MMEDDQEYDQQYEEEDDEEITQEDAWAVISSYFEDKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLSRTSARGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGTGDF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLV
AKGYIEYIDTEEEETTMISMTISDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSIS
LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacgatcaggaatacgaccaacagtacgaggaagaggatgatgaggagatc
acccaagaggatgcctgggcggttatctcgtcctacttcgaggataaaggtttggtgcgg
caacagcttgactccttcgacgagttcatccagaataccatgcaggaaattgttgatgaa
tcggccgatatcgagattcgccccgagtcgcagcacaaccccggtcaccagtccgatttt
gccgagactatctataagatcagcttcggtcagatatacttaagtaagccaatgatgacg
gagtctgatggagaaactgcaaccttgtttcctaaggctgctaggttgaggaatctcact
tattcagctcccttgtacgtggatgtcacaaagagggttataaagaaagggcatgatggt
gaagaagtaactgaaactcaggatttcaccaaagttttcattgggaaagtgccaattatg
ctgcgttcaagttattgcacgctttttcagaattcagaaaaagatttgaccgaacttggg
gagtgtccatatgatcaaggtggctattttattattaatgggagtgaaaaagtcctcata
gctcaagagaagatgagcaccaatcatgtctatgttttcaaaaagaggcagcctaacaaa
tatgcctatgtggctgaagttcgctcaatggcagagtcccagaaccggccacctagtaca
atgtttgtgcgcatgctttctcggacaagtgccagagggggttcgtcagggcaatatata
cgtgctacacttccatatattcgaactgaaatccccattattattgtgttccgagctttg
gggtttgttgctgacaaggatatattagagcacatatgctatgatttctctgatactcaa
atgatggagttgcttcgaccatcattggaagaagcattcgttattcaaaatcaacaggtt
gctcttgactatatcggaaaaagaggagcaactgttggtgttactagggaaaagaggatt
aagtatgctaaagagatccttcaaaaggaaatgctacctcatgttggtactggggatttt
tgtgagacaaagaaagcttattattttgggtatattattcaccggcttcttctttgtgca
cttggtcggagggcggaagatgatagggatcattacggcaacaagaggctagacctggct
ggtcctctacttggaggtctatttagaatgcttttcagaaagttaacaagggatgtgcga
gcttatgttcagaagtgtgttgacaatggaaaggatgttaacctgcaatttgctatcaaa
gcaaaaaccataactagtggccttaaatattcacttgccactgggaactggggccaagca
aatgcagctggaacaagagcaggagtgtcacaggtgttaaatcgtttaacatatgcgtcg
acgttgtcacatttgcgcagactaaactcccctattggccgagaagggaagcttgccaaa
ccacgacagttgcataattctcagtgggggatgatgtgtccggctgaaacacctgaagga
caagcatgtgggctggttaagaatctcgctttgatggtctacatcacagttggatcagct
gcgtatcctatcttggaatttttggaggaatggggtacagagaattttgaggaaatttct
cctgctgttattccccaagcaacaaaaatttttgttaatggttgctgggttggcatccat
cgtgatcctgatatgttggtgaagacattgagacggctaaggagacgggttgacgttaac
actgaagttggagttgttagagatatccgtctcaaagaactgcgaatatatactgattat
ggtcgttgtagtcgtcctttattcattgtggagaagcaaaggcttctcataaagaagaaa
gatatccatgcactgcagcagagggaaagcccagaagatggtggctggcatgatcttgta
gcaaagggatatatagaatacattgacactgaggaagaagagaccacaatgatttccatg
accatcagtgatctagtgcaagcaaggattaacccagaagatgcttattctgacacttac
actcattgtgagatccacccatcgttgattttgggagtttgtgcctcaattataccattt
cctgaccacaatcagtctccacgtaatacatatcaatctgctatgggtaagcaagccatg
ggaatatatgtcaccaattaccagtttcgaatggatacgttggcctatgttctctattat
cctcaaaaaccacttgttacaactagagctatggagcacctccattttaggcaacttcct
gctggcattaatgctattgttgccattgcatgctattctgggtacaaccaagaagattct
gtgattatgaaccaatcatcaatagatcgtggattctttcgatcccttttcttccgttca
tacagagatgaggagaaaaagatgggaactcttgtcaaagaagattttggtcgtccagac
agggctaataccatgggcatgcgtcatggatcttatgataagttggatgatgatggtctt
gcacctcctggaacaagagtttcaggggaggacgtgataattggtaagactacacctatt
tctcaagatgaagctcaaggccaagcttcacgctatacaagacgtgatcatagcataagc
ttacgtcatagtgaaactggcatagttgatcaggttttgctgacaacaaatgctgatggt
ttgaggtttgtgaaagtgagggttagatctgttagaataccccagataggagacaagttc
agtagtaggcatggtcagaagggaacagttggcatgacttacacacaggaggatatgcca
tggacaattgaagggatcaccccggatattatagtgaatccacatgctattccctctcgt
atgacaattgggcagcttattgagtgtattatggggaaggttgctgcccacatgggcaag
gaaggggatgctactccttttactgatgttactgtggacaacattagcaaggct
DBGET
integrated database retrieval system
