Cucurbita pepo subsp. pepo (vegetable marrow): 111802780
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Entry
111802780 CDS
T05351
Name
(RefSeq) general transcription factor IIF subunit 2-like isoform X1
KO
K03139
transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111802780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111802780
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
111802780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_beta
TFIIF_beta_N
Tau95
bact_SelB_WH_2nd
Motif
Other DBs
NCBI-GeneID:
111802780
NCBI-ProteinID:
XP_023543024
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All DBs
Position
LG01:complement(19112314..19119049)
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AA seq
276 aa
AA seq
DB search
MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSR
PVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFSESAQ
GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM
DVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYM
KEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgacgacaaacccatcgaccgtggcagttccagaaaactccacagcaatagc
agcaccgtcgccggaaccgactttttggagacgaacaaggcggacagagcaatgtggctc
ttgaaatgcccgcaagttgtaactcgcgccctttccaattcgccggatgatccttctcgt
ccggtcgctaaggtcattgtttctgttgatcctctgcagtcgaatgatgacgatgattct
tcatctactgagtttaccatggaattggctgacaccgactctggaaaagcattaagagcc
tactcattgaatatgtccacagatttcattccgatgtctgtattttctgagtcagcacaa
gggaagtttactgttgaaggaaaaatactgaacaaatttgacatgaagccgcatgatcaa
aatcttgatagttacgggaaactctgtcgtgaaagaactcacaagtctatgaccaaaagc
agacagattcaggtgattgatcatgtcacaggaggacatatgaggccaatgccagggatg
gacgtgttgtcatttggagctgcagagaagaagaaggtggtgagcaagggatcggaaaat
aagaggctgaggaaggagcgtggcgaattggagaagatcatttttaggctctttgaaaga
cagccatattggacctcaaaacaattgattcaagagaccgatcaacctgaacaatatatg
aaagaaatccttaaagatctctgtgtctacaacaacaagggcgttcaccaaggaacatat
gagctgaagccagagtacaaggaaacatgtgaggaaacgaaacctcgatag
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