Chrysemys picta (western painted turtle): 101950622
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Entry
101950622 CDS
T04662
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03440
Homologous recombination
cpic03450
Non-homologous end-joining
cpic04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101950622 (RAD50)
03450 Non-homologous end-joining
101950622 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
101950622 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpic03032
]
101950622 (RAD50)
03400 DNA repair and recombination proteins [BR:
cpic03400
]
101950622 (RAD50)
DNA replication proteins [BR:
cpic03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
101950622 (RAD50)
DNA repair and recombination proteins [BR:
cpic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
101950622 (RAD50)
BRCA1-C complex
101950622 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
101950622 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
Crescentin
DUF1664
AAA_29
DUF2703
AAA_16
Motif
Other DBs
NCBI-GeneID:
101950622
NCBI-ProteinID:
XP_008169432
UniProt:
A0A8C3HT07
LinkDB
All DBs
Position
8:complement(21760872..21805935)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGHSFVHDPKVANETDVRAQIRLQFRDVTGELIAVQRSMVCTQKGKKTEFKTLEGIITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVINNVIFCHQEESNWPLSEGRALKQKFDEIF
SATRYIKALETLRQVRQKQSLRVKECQTELKYLKQNKEKAREIQDHLSNREAQLAASKEN
VKSIENQLDPLKNRLAEIEQNLAKVVRLDNEIKALDSRKRQMEKDNQDLQQKMEKVFQGT
DDQLRDMYQNHQRTVKEKERRLTDCQRELDRASKECQRFNREKSELLVEQGRLQLQADRH
QQDIRTRDSLIQTLAALLELDGFERTPFNERQINSFHKLVKERQEREAETASQIMREFAE
KETMKQKQIDEIRDKKTGLEKTIDLKSDIQNKKQIELKNVKYELNQLEESSDRILELDQE
LIKAERELDKAEKNSNVEALELEVQKLQNEKANLDKVLQKLDQEMEQLNLHTKTITQMDM
LRKDKVDKEEQIRKIKSRHTDELTLLLGYFPNKKQLEDWLHAKTREINQTRDKLAQLNKE
LASAEQNKNHISIELRKKEEQLSNYEDKLFDVCGSQDFDSDLYKLQDEIEKTSKQRAMLA
GATAVYSQFITQLTDEKQSCCPVCQRVFQTESELEDVISDLQSKLRLAPDKLKSTESELK
RREKKRDEMMGLKPIRQTIAELKEKDIPDLRNKLQNVNRDIQRLKSDVEEQETLLGTVMP
EEESAKACLQDITLMERYQTDLRDVERKIAQQANKLQGVDLDRTLIQVSQEKQEKKHLWD
TVTGKIELNQKLKQDQQTQIQQLKSTVNELKAEKLQISSNMQRRQQLEDQTVELSTGVQS
LYREIKEAKDQLFPLEATLEKLQRERVDLINKKNTSNKVTQEKINEIKEKVKNIHDYVKE
IEKYIQGGKEDYKKQKESELDEVKTQLADCEKQKEKISKEMGTIRQDIDTQKIQERWLED
NLTLRKRNDDLKEVEEERKQHLKEMGEMKVPQLKNERQCLVEKLEDFKRNHSLALGRQHG
FEEEIIRFKKELRESQFKDAEEKYREMMIVMRTTELVNRDLDMYYKALDKAIMTFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDADENVSASDKRRNYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGSYAH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgataagatgagcatccttggagtgaggagtttcggggtagaggacaaa
gacaaacaagtcatcactttctttagtcctttaaccattttggtggggccaaatggtgca
ggaaaaacgactatcattgaatgccttaaatatatttctactggagatttccctccaggc
accaaaggacactcatttgttcatgatccaaaggttgctaatgaaacagatgtcagagct
cagattcgactgcagtttcgtgatgttactggagagcttatagctgtccaacgatccatg
gtttgtactcagaaaggcaagaaaacagaatttaaaactcttgaaggtatcattaccaga
acaaagcatggggaaaaggtcagtctcagttccaagtgtgcggaaattgaccgagaaatg
atcagcgcccttggtgtttccaaatctgtgattaacaatgtcattttctgtcatcaagaa
gaatccaactggcccttaagtgagggaagggccctgaaacaaaaatttgatgagatcttc
tcagcaacaaggtatattaaagcattggaaactcttcgtcaggtacgtcagaagcaaagc
ttgcgggtaaaagagtgtcagacggaactgaaatatctaaaacagaataaagaaaaagca
cgtgaaattcaagatcatcttagtaatagggaagcccaactggctgcttctaaggaaaat
gtaaaatctattgagaatcaacttgatcctctaaagaaccgtctcgcagaaattgaacag
aatcttgcaaaagtagtgagacttgacaacgagattaaagctctggacagcaggaaaagg
cagatggaaaaagataaccaggatttgcaacagaagatggagaaggtttttcaaggaaca
gatgaccaactaagagatatgtaccagaaccatcagagaacagtaaaagagaaggaaagg
agattaacagactgtcaacgtgagctggatagagcaagcaaagagtgtcagagattcaac
agagagaaatcagaattgcttgttgaacaaggtcgtcttcagctacaagcagatcgtcac
cagcaggacatcagaaccagggattcattaatccagactttagcagcactgttggaatta
gatggttttgaacgaacaccttttaatgaaaggcaaattaacagttttcacaagcttgtg
aaagagagacaagaaagagaagccgaaactgccagtcagataatgagagaatttgcagaa
aaagaaacaatgaaacaaaaacagatagatgaaataagagataagaaaactggactggaa
aaaaccattgacctgaagtcagacattcaaaataagaaacagattgaactgaagaatgtg
aaatatgaactgaatcagttggaggagtcttcagacaggattctggaactggatcaggaa
ctcatcaaggctgaacgtgaactagataaggctgagaagaacagcaatgtggaagctctt
gaattggaggtacaaaaacttcagaatgagaaagcaaacctggacaaggttcttcagaaa
ttggatcaggagatggaacagctaaacttgcataccaagacaatcacccaaatggatatg
ttgaggaaagacaaagtggacaaagaggagcagatcagaaaaataaaatctagacatact
gatgaattgaccttattgctgggatattttccaaacaaaaaacagctcgaggattggctt
catgctaaaactagagagattaatcagacaagagacaagcttgcccaacttaacaaagaa
ctagcttcagcagaacaaaataaaaatcatatcagtattgagctaagaaaaaaagaagag
cagttgtccaattatgaagacaaactttttgatgtttgtggaagccaagattttgatagt
gatctatacaaacttcaggatgaaattgaaaagacttcaaagcagcgcgctatgcttgct
ggagccacagcagtttattcacagtttattacacaactgacagatgagaaacagtcatgt
tgcccagtttgtcagagggtctttcaaacagagtcagaactggaagatgtaattagcgat
ctgcagtccaagttacgtcttgctccagataaactgaagtcaacagagtctgagcttaaa
agaagagaaaagaagcgtgatgaaatgatggggcttaaaccaataaggcagaccatagct
gaacttaaagaaaaggacataccagacttaagaaacaagctacagaatgtaaaccgagat
attcagcgcctaaagagtgatgtagaagaacaggaaactctcttaggtacagttatgcct
gaggaggaaagtgccaaagcatgtttacaagatataacacttatggaaagataccagact
gatctaagggatgttgaacgaaaaattgcccagcaggccaataagctgcaaggggtagac
ttagatcgaactcttatacaagtaagccaggaaaaacaagaaaaaaaacacctgtgggat
acagttactggtaaaattgagttaaatcaaaaacttaaacaggaccagcagactcagatc
cagcagctaaagagtacagtgaatgaacttaaagcagagaagctacaaatttccagtaat
atgcagcgtcgacaacaactggaggatcagactgtggaattgtccactggggttcagtct
ttatacagagagatcaaagaggcgaaggatcagctatttcctttggaagcaactttagaa
aaacttcagcgagaaagagtagatctaatcaacaaaaagaacacaagtaacaaagtaaca
caagagaagataaatgagatcaaagagaaagttaaaaatatccatgactatgtgaaagaa
attgaaaaatatattcagggaggaaaagaagactataaaaagcaaaaagagtctgaactt
gatgaagtaaaaactcaactagctgattgtgagaaacagaaagaaaaaataagtaaagaa
atgggaacaattagacaagacattgatactcagaagatccaggaaagatggctagaggat
aaccttacattaagaaaaagaaatgacgacctaaaagaagttgaagaagaacgaaaacaa
catttgaaggagatgggggaaatgaaagttccacaactgaaaaatgaacgacaatgtctg
gtggagaaattagaggattttaaaagaaatcacagtttggcattaggtcggcagcatgga
tttgaggaagagatcattcggtttaagaaagagcttcgagaatctcagttcaaagatgct
gaggaaaagtacagagaaatgatgattgttatgagaacaacagagctggtaaacagggat
ctagacatgtactacaaagcacttgataaagcaataatgacatttcacagcatgaaaatg
gaagaaatcaacaaaatcattcgtgatctttggcgaagcacctacagagggcaagatatt
gaatatgtagaaattcgttctgatgcagatgaaaatgtttcagcgtctgataaaaggagg
aactacaattatagagtagtaatgataaaaggagatactgctctggacatgcgagggaga
tgcagtgctgggcaaaaggtgcttgcttccctcattattcgtcttgctctggcagaaaca
ttctgtctcaactgtggcattcttgcactggatgagcctaccaccaaccttgatcgagag
aacattgagtctcttgcacatgctctggtggagataataaaaagccgctcacaacagcgc
aactttcagcttcttgtcataacacatgatgaagattttgtggagcttttgggccgttct
gaatacgtggagaaattctacaggataaagaagaacattgaccaatgttctgagattgtg
aagtgtagtgtcagttccttaggatcctatgctcattag
DBGET
integrated database retrieval system
