Clostridium perfringens SM101: CPR_0328
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Entry
CPR_0328 CDS
T00379
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpr
Clostridium perfringens SM101
Pathway
cpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPR_0328 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpr03019
]
CPR_0328 (recQ_1)
03400 DNA repair and recombination proteins [BR:
cpr03400
]
CPR_0328 (recQ_1)
Enzymes [BR:
cpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPR_0328 (recQ_1)
Messenger RNA biogenesis [BR:
cpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPR_0328 (recQ_1)
DNA repair and recombination proteins [BR:
cpr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CPR_0328 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABG87392
UniProt:
Q0SW43
LinkDB
All DBs
Position
391776..393941
Genome browser
AA seq
721 aa
AA seq
DB search
MNRAKEILKSFYGYSEFRKGQEEIINEIISGNDVVAIMPTGGGKSICYQIPALILEGVTV
VISPLISLMKDQVDAINSMGIESAYINSTLSNEEINNIFQSVKDGHIKILYVAPERLESM
EFLNLVSNIDISQVAVDEAHCVSQWGHDFRSSYKFIGRFINILRKRPVVSAFTATATEEV
RKDIVKLLELNNPKVFVSGFDRDNLKIIIEKGVNKAHYILDYLKENKDVSGIIYCSTRRE
VDSLCELINSRGIGCTKYHAGLSDEERKKNQEDFVFDKVSVMVATNAFGMGIDKPNIRYV
IHNNMPKNIEGYYQEIGRAGRDGEKSECILIFSPGDVQTQKYIIETGTLNPERKINELSK
LQTMMDLVYCNGCYRRFILNYFGEDLEEDCHNCSNCEMEGELVDKTIDAQKVISCVYRMK
RPFGIGVIIDVLRASKNKKIIELGLDQLSTYGIMKDYSKEGLKDFINTLISHRYIDYIGE
YPVVRLNQSSIDILKGNEKVMFKEKIKAKRVSKNNELFDLLRSLRREIASEEGVPPYIVF
GDNTLKEMSVRMPVNESQLSEISGVGEKKILKYGEMFLNVINEYVKVNNIEIKWESGLKI
NKDELEKKFKKGNGKDGKKKSFEITIDMLREGKKFHTIVKERELSITTLLSHIQQYLEEG
NKIDFEIDFDSLFSKREEKLILDAIDKVGYSKLKPIKENLEEDVSYEKIRFIVTKFIINM
I
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
ttgaatagagcgaaagaaattttaaaaagtttttatggatatagtgagtttagaaaagga
caagaggaaataataaatgagattataagtggaaatgatgttgtagctataatgccaact
ggtggaggaaaatcaatttgttatcaaattcctgcattgattttagagggggttacagtt
gtaatttcaccacttatttctcttatgaaagaccaagttgatgccataaatagcatggga
atagagtcagcatatataaattctactcttagtaatgaagagataaataatatatttcaa
agtgttaaagatggacatataaaaatattatatgtggcacctgaaagacttgaatctatg
gaatttttaaatttagtttctaatatagatatttcacaggtggctgttgatgaggcacat
tgtgtttctcaatggggacatgattttagaagtagttataagtttattggaaggtttata
aatattttaagaaaaagacctgtagtttcagcctttacagcaactgcaacagaggaagtt
agaaaagatattgtaaaattacttgagcttaataatccaaaggtttttgtttctggattt
gatagggataatttaaaaataataatagaaaagggagttaacaaggctcactatatatta
gattatttaaaagaaaataaggatgtttctggaattatttattgttctaccagaagagag
gtagattccttatgtgagcttataaattcaagaggaataggatgcacaaaatatcatgct
ggactttcagatgaggaaagaaagaaaaatcaagaggattttgttttcgataaggtaagt
gtaatggttgctactaatgcctttggaatgggtatagataagccaaatataagatatgta
attcacaataatatgcctaaaaacatagagggatattatcaggaaataggaagagcggga
agagatggagagaaatcagagtgtatccttatcttttcaccaggagatgttcagacacag
aaatatataatagaaactggaaccttaaatcctgaaagaaagataaatgaattaagtaag
ttacaaacaatgatggatttagtttattgtaatggatgttatagaagatttatacttaat
tattttggagaagacttagaggaagactgtcataattgtagcaattgtgaaatggaaggg
gaattagttgataaaacaatagatgctcaaaaagttatttcctgtgtttataggatgaaa
agaccctttggaataggagtaataatagatgttttaagagcctcaaaaaataaaaagata
attgaattagggttagatcagctaagtacttatggaataatgaaggattattctaaagaa
gggcttaaggactttataaacactctaatttcgcatagatatatagattatataggggag
taccctgtagttagacttaatcaaagttccatagatattcttaagggtaatgaaaaagtt
atgtttaaggaaaaaataaaagctaagagggtatctaaaaataatgaattatttgattta
ttaagaagtttaagaagagaaattgcttcagaagaaggggtacctccatatatagtattt
ggtgataatacacttaaagagatgagtgtaagaatgccagtaaatgagagccagctttca
gaaataagtggtgttggtgaaaagaaaatacttaagtatggagaaatgttcttaaatgta
ataaatgaatatgttaaggtgaacaatattgagattaagtgggaatctggattgaaaatt
aataaggatgagctagaaaaaaagtttaaaaaaggtaatggtaaggatgggaagaaaaag
tcctttgaaattactatagatatgcttagagaagggaaaaaattccatactattgtaaag
gaaagagaactttctattactacattactttctcatattcagcaatatttagaagaggga
aataaaatagactttgaaatagattttgattccttattttcaaaaagggaagaaaaattg
attttagatgctatagataaggttgggtatagtaagttaaagcctattaaggaaaatcta
gaagaagatgtatcatatgaaaaaataagatttatagttactaaatttattataaacatg
atttaa
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