Collimonas pratensis: CPter91_3330
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Entry
CPter91_3330 CDS
T04306
Name
(GenBank) sigma-70 region 2 family protein
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
cpra
Collimonas pratensis
Brite
KEGG Orthology (KO) [BR:
cpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpra03021
]
CPter91_3330
Transcription machinery [BR:
cpra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPter91_3330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF6596
Sigma70_r2
Sigma70_r4_2
TPR_2
TPR_14
TPR_8
ANAPC5
TPR_12
TPR_7
Sigma70_r4
TPR_21
Motif
Other DBs
NCBI-ProteinID:
AMP05657
UniProt:
A0A127Q6J9
LinkDB
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Position
complement(3421657..3422895)
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AA seq
412 aa
AA seq
DB search
MQTNASIEDIYRSESRRVFATLVRLLGDFDLAEEALQDAFKAAIEQWPRDGIPAQPVAWL
VSAGRFKAIDGIRRRARFTSYEDVAEVADAIPDETPAPDQREHLEDDRLRLIFTCCHPSL
APDAQIALTLREVCGLSTEEIAHAFLTPAPTLAQRIVRAKAKIRDARIPYQVPERDELPA
RLYSVLRVVYLVFNEGYSASSGVSLTRHDLSQEAIRLARLLLELLPEPEVAGLLALMLLH
ESRRSARSTADGDLVPLDEQDRSLWNAELIAEGSALVGHAVSSRRIGAYTLQAAISAVHA
QAPRADATDWQQIVGLYDALLRLEPTPVIELNRAVAVAMHQGPEAGLVLVDGLIAGGHLH
NYHLAYAAQADFHRRLGHVAEARAAYGKALALTQQEPEQRFLHRRLAGLAEQ
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaaacgcttcgattgaagacatttaccgtagcgaatcgcggcgcgtattcgcc
acgctggtgcgcctgctgggcgacttcgacctggcagaagaagccctgcaagatgccttc
aaggccgccatcgagcaatggccgcgcgatggcattccagcgcagccggtagcgtggctg
gtgtccgccgggcgcttcaaggccatcgacggcatccggcggcgcgccaggtttacctcc
tatgaagacgtcgccgaggtggccgacgcgattcctgacgagacgccggcgccggaccag
cgcgagcatctggaggatgaccgcctgcgtttgatttttacctgctgccacccttcgctg
gcgcccgatgctcagatagccttgaccttgcgcgaagtctgcggactcagcacggaagaa
atcgcacacgcctttctgactccggcaccgacgctggcgcaacgtatcgtgcgcgccaag
gccaagatacgcgacgcccgcattccctaccaggtgcctgagcgcgacgaattgccggcg
cggctgtacagcgtgctgcgtgtggtctatctggtgttcaacgagggctattcggcatct
tccggcgtctcgctcacacggcatgacttgtcgcaggaagcgatccgtctggcgcgtctg
ctgctggaattgctgcctgagccggaagtggcgggcctgctggccctgatgttgctgcat
gagtcgcgccgcagtgcgcgcagcaccgcggacggcgacctggtgccgctcgacgagcaa
gaccgcagcttatggaatgccgaactgattgccgaaggttcggcgttggtcgggcatgcc
gtgtcgtcgcgacggataggcgcctatacgctgcaggcggcgatctcggcggtgcatgcg
caagcgccgcgggccgatgctaccgactggcagcagatcgtcggcttgtacgacgccttg
ctgcggctggagccgacgccggtgatcgaattgaaccgcgcggtcgcggtagcgatgcac
caggggcccgaggctggcctggtgttggtggacgggctgattgccggcggtcacttgcat
aactatcatctggcgtatgcggcgcaagccgatttccaccggcgcctgggacatgtggca
gaagcgcgcgctgcctatggcaaggcactggcgctgacgcagcaggagccggagcagcgt
tttctgcaccggcgtctggctggcctggccgaacaataa
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