KEGG   Chenopodium quinoa (quinoa): 110730889Help
Entry
110730889         CDS       T05764                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03030  DNA replication
cqi03410  Base excision repair
cqi03420  Nucleotide excision repair
cqi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110730889
   03410 Base excision repair
    110730889
   03420 Nucleotide excision repair
    110730889
   03430 Mismatch repair
    110730889
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cqi03032]
    110730889
   03400 DNA repair and recombination proteins [BR:cqi03400]
    110730889
Enzymes [BR:cqi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110730889
    6.5.1.6  DNA ligase (ATP or NAD+)
     110730889
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     110730889
DNA replication proteins [BR:cqi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    110730889
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     110730889
DNA repair and recombination proteins [BR:cqi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     110730889
   NER (nucleotide excision repair)
    Other NER factors
     110730889
   MMR (mismatch excision repair)
    Other MMR factors
     110730889
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase CBX7_C
Motif
Other DBs
NCBI-GeneID: 110730889
NCBI-ProteinID: XP_021766409
LinkDB All DBs
Position
Unknown
AA seq 844 aa AA seqDB search
MSKKMLIDVECFCVSTFISSVAGERHMFIVIRPSSRHFFPPSLPKILGHCRMLKISHPSS
SCFLIFRPLNTTIFSSTFSLLHFPTNFKLRAMSSTPPPSTPPSSTPPSSSSIFASMMGKA
RESSKKKTQSPNKKTPKSSSSSPKKRKTLDPSPAIAENPNPTSISVEKPQESNSVVEMGT
QKPELKNPFAKKPKVDLNVDEFVANLKIKPAKFDPNLAAWWGDGDKVPFLFLARAFDMIK
GESGRIVITDITCNVLRTVIAKTPDDLLEVVYLLANKIAPAHQGLELGIGDATLIKALAE
ACGATEANVKKLYKDLGDLGDVAKEIRSKQSMMRQPPPLTITKVFNTFQLIAKASGKDSQ
ERKKNYIKSLIVAAKDCEPVYLMRLLQAKLRISLAEKTLLVALGQAAVYSEEHSKPPSDI
QSPLEEAGKIVKQVYSVVPVYDKIIPALLSDGVWNLSKTCNFTPGVPIGPMLAKPTNGVS
EIIDKFQDMVFTCEYKYDGERAQIHFMEDGSVDIYSRNAERNTEKFPDVVAALPRFKKPS
VKSFILDCEIVAYDREKQKILPFQILSTRARKNVKMSEIKVDVCVFAFDILYLNGMPLLQ
EQLDVRRKHLYDSFEEDCGYFQFATTLTSNDIEEIQKFLEASVNASCEGLIIKTLEKEAT
YEPSKRSNNWLKLKKDYMDSVGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDSNNEEFQS
ICKIGTGFSEAVLEERSSSLRSKVISIPKTYFRYGDNLKPDVWFEPSEVWEVKAADLTIS
PVHRAAVGIVDSDKGISLRFPRLVRLREDKAPEDATSSDQVAEMYRSQANNPHRKTKDDL
EEED
NT seq 2535 nt NT seq  +upstreamnt  +downstreamnt
atgagcaaaaaaatgctcattgatgtagagtgtttttgtgtatcaacgttcatttcatcc
gtagccggcgagagacacatgttcatagtcatacggcctagttcccgccattttttccca
ccttcactcccaaaaatccttggacattgtcgaatgttgaaaatctctcatccttcttcc
tcttgctttctcatttttcgcccactcaacaccaccattttctcctccactttctctctc
ctccatttccctacgaatttcaagcttcgagcaatgtcttctactcctcctccttcgact
ccaccctcttctactcccccatcttcttcttccattttcgcatctatgatgggcaaagct
cgagaatcttctaagaagaaaacccaatcccctaataaaaaaacccccaaatcttcttcc
tcttctccaaagaaacgaaaaaccctagacccatctcccgcaattgcagaaaaccctaac
cccacttcgatttctgttgagaaaccccaagaatccaattccgtggtagaaatgggtacc
caaaagcctgaattgaaaaacccttttgctaagaaacctaaggttgatcttaatgtggat
gaatttgttgctaatttgaagattaaaccggccaaattcgaccccaatttggctgcgtgg
tggggggatggtgataaagttccttttctttttcttgctagggcgtttgatatgattaaa
ggtgaatcgggtaggattgtgattactgatattacttgtaatgtgttgaggactgtcatt
gcaaagactcctgatgatcttttggaggttgtttatcttttggccaacaagattgctcct
gctcatcaaggtttggagctcggaatcggtgatgctacgcttattaaggcgcttgccgag
gcttgtggagctactgaagcaaatgttaagaagttatacaaggatttaggtgatctcggg
gatgtcgccaaagaaatccgttctaagcaaagtatgatgcggcaacctccaccactgacc
attaccaaagtatttaatacattccagctcattgccaaggcatccgggaaggatagtcaa
gaaagaaaaaagaattatatcaaatcacttattgtggctgccaaagattgtgaacctgtt
tacttgatgcgactacttcaggcaaaattgcggattagtttggcagagaaaactcttctt
gttgccctgggacaagctgcagtgtattccgaagagcattctaagcccccgtcagatatt
caatctccactagaagaagctggaaagattgttaaacaagtttactcagtggttcctgtg
tatgataaaattatccctgcccttctcagtgatggtgtatggaatttatcaaagacctgt
aactttacaccaggtgttcctataggacctatgttagcgaaaccaacaaatggagtttca
gaaatcatagataagtttcaagatatggtatttacttgtgagtacaagtatgatggagaa
cgtgctcaaattcatttcatggaagatggttctgttgacatatacagccgaaatgctgaa
aggaacacagagaaattccctgatgttgttgctgctcttccaaggttcaagaagccatct
gtaaagtcttttattttggactgtgaaattgttgcttatgatcgtgagaagcagaagatt
cttccttttcagatactaagcacccgagctcgcaaaaatgtcaaaatgagtgagataaag
gttgatgtttgtgtcttcgctttcgacatattgtatttgaatggaatgccacttctccag
gaacagcttgatgttcgtagaaagcatctttatgattcatttgaggaagattgtggatat
tttcagtttgctacaacacttacatctaatgatattgaggaaatacagaagtttcttgaa
gcgtctgtcaatgcgagttgtgaggggttgattatcaaaacattggaaaaagaggccacc
tatgagccttcaaagagatctaataactggcttaaattgaaaaaggattacatggacagt
gttggggactctttggatctggtgcctattggagcattccatggccgtgggaaacgaaca
ggtgtttatggtgcttttctccttgcttgctatgacagtaacaatgaagagttccagagc
atatgcaaaattggtactggtttttctgaggcagtgcttgaggaacgttcttccagtctt
cgatctaaagtgatttcaattcctaagacatactttcggtatggagataacctgaaaccg
gatgtctggtttgaaccttctgaggtatgggaggtcaaagcagctgacttgactattagt
cctgttcaccgtgctgcagttggtattgtagattctgacaagggaatttctctccggttt
ccacgtttggttcgtcttagagaagacaaagctcccgaggacgccacatcatctgatcag
gtggcagaaatgtacagatctcaagcaaataatccacaccgcaaaacaaaagatgatttg
gaagaagaggactga

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