Capsella rubella (pink shepherd's-purse): 17885209
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Entry
17885209 CDS
T02984
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17885209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17885209
03009 Ribosome biogenesis [BR:
crb03009
]
17885209
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17885209
Spliceosome [BR:
crb03041
]
Complex A
U2 snRNP components
U2 related factors
17885209
Complex B
17885209
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
17885209
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
90S particles
Helicases
17885209
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
T2SSE
AAA_7
AAA_30
PhoH
Motif
Other DBs
NCBI-GeneID:
17885209
NCBI-ProteinID:
XP_023639220
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVMDDPSAPPKHGKINGLPDVGINSLVNKWNGKPYSQRYYDILEKRRT
LPVWLQKEEFLKTLNSHQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVG
NLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAFKQNNEDPNWCYENFINNRAMKSADNVRQQLVRIMSRFNL
KMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLSNFPNCEAKRVLEKLYKKREREKEE
SKSRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagagagaaagaggaaagttagtttgttcgacgttatggacgatccgtcggct
ccaccgaagcacggcaaaatcaatggtcttcccgacgtcggaatcaacagtctcgtcaat
aaatggaacgggaagccttattcacagaggtattatgatattttggagaaacggaggact
cttcctgtctggctgcaaaaagaggagtttctcaaaactttgaacagccatcagaccctt
attcttgtcggtgagaccggtagtggtaaaactacccagatcccacagttcgttatagat
gctgtggacgctgaaacttcggataagcgtaggaagtggttggttggatgcacacagcct
cgtagagttgcagccatgtctgtgtctcgtcgtgttgctgaagagatggatgttactata
ggggaagaagttggttacagcattcgttttgaggactgcagtagccccagaaccgtgctt
aagtacttgactgatggtatgctcctgagagaagcaatggcggacccgctcctagagaga
tacaaagtgatcattctcgatgaggcccacgaaagaactctagccacagatgtgctcttt
ggtcttctcaaggaagtgttgaaaaatagacctgatcttaagttagttgtgatgagtgct
actctagaagctgaaaagtttcaggaatattttagcggtgctcctctgatgaaagttccg
ggtaggcttcatccagttgagatcttttacactcaggagcctgagagggactatcttgag
gctgctattagaactgttgttcagatccacatgtgtgagccacctggtgatattcttgtt
ttcttaactggggaggaggagattgaagatgcctgccgcaaaatcaataaagaggttggt
aatcttggggatcaggtgggacctgttaaagtcgtgccactgtattctactcttccacct
gcgatgcagcagaagatatttgatcctgctccagagccggtaactgaaggtggtcctcct
gggagaaagattgttgtctccactaacattgctgagacttccctaactatagatgggatt
gtctatgtcattgaccctggttttgctaagcaaaaagtctacaacccacgaatccgtgtt
gagtcattgttggtgtccccgatttctaaggcaagtgctcaccagagatctggtcgtgct
ggtagaacaaggcctggaaaatgcttcaggctttatacagagaagagtttcaataatgac
ttgcagccgcagacctatcctgaaatattaagatcaaaccttgcaaacactgttctgacc
ttgaaaaaactgggtatcgatgacctggtgcacttcgattttatggatccccctgctcct
gaaacgctgatgcgagccttagaagttttgaattacttgggagcactggatgatgaaggt
aacttgacaaagacaggtgagataatgagtgagttccccttggatccacagatggcaaag
atgctcatagtcagtcctgaattcaactgctcaaacgagattctctctgtttcagccatg
ctttcagtaccgaattgctttattcggcctagagaggctcaaaaagcagcagatgaagct
aaagctaggtttggacacattgatggagatcacctcacattgttgaatgtctaccatgct
tttaagcaaaataatgaagatcccaattggtgctatgaaaacttcatcaacaatagagca
atgaaatctgcagacaatgttagacagcagctagtccggataatgtcaaggttcaacctg
aagatgtgcagcactgattttaacagccgcgactactacattaatataaggaaggccatg
cttgccggttatttcatgcaagtggctcacttagaacgcactggccattacttgacagtc
aaagacaatcaagtggttcatctgcatccatcaaattgcttggatcacaaacctgagtgg
gtaatctacaacgaatatgttttgactagccggaatttcatcagaactgtgacagatatt
cgcggtgaatggctagtagatgttgcttctcattactatgatctttccaactttcccaac
tgcgaagcgaaacgtgtcctcgagaagctttataagaagagagaaagggagaaggaagag
agcaagagccggaagtga
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integrated database retrieval system