Corynebacterium rouxii: FRC0190_00868
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Entry
FRC0190_00868 CDS
T06840
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
crf
Corynebacterium rouxii
Pathway
crf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRC0190_00868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crf03400
]
FRC0190_00868
Enzymes [BR:
crf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRC0190_00868
DNA repair and recombination proteins [BR:
crf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FRC0190_00868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
VZH84873
UniProt:
A0A6I8MH91
LinkDB
All DBs
Position
1:844321..848115
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AA seq
1264 aa
AA seq
DB search
MPDKSVPAAQPPMLAGLLKVAATDPKIKGLLQHVGEPHLHITGIDQARPWAIAALAHRAP
VLVVTATGREAEDLSAELRAMLGEKVAWFPAWETLPHERLSPGADIAGQRARILSHIADY
SVVVTAARGLSQPIVSQVAGRDPLVLELDSECSLEEATQQLVFRAYHHVDLVAKRGEFAT
RGGILDVFPTTAQHPVRVEFWGDEVSEIRGFQVADQRAIPDSDVPRVEIFPARELPITPE
IAQRAAELAVKFQGNPTLQELLAKISDSIPSDGMEALIPALIDQPMVTLAELMPENTHVV
VVGPEKIRTRVADLQATDAEFLAAGWEAAAMGADGPVATRGLDLDASSYRSYESLEKTAQ
KHNMPWWTFAPPGMFEASDGDTLPLEFEPGPTPRGDLEQIDQMMALLLAHTRDGGAAAFI
APAQGAIKRMVERFKEQGIPTKVATPGWQPTLGEVTLYQAMSHAGLVFPKVRKQPGKPAL
PLVVITETDLTGNRVGDIAGAKRRPAKRRHRVDPLALKTGDYVVHETHGIGRFLKMTERV
IQSGDETSRREYIVLEYAASKRGQPADQLYVPMDSLDMLSKYVGGEKPTLSKMGGSDWKN
TKKKARAAVREIAGELVELYAKRQSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAV
KADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEER
MAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQ
RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGA
QEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQ
TVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYA
YFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGF
DLYVRLVGEAVEAYRALADGKVVDATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRK
LSASTSDEDLALVVEEMKDRFGPVPDEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHP
VELTDSKQVRLKRLAPSATYRAAAKAIQLPFPKEGAKVTDKQLRDVELLQWVADFIAEMF
EHDRVSVTGEKLPEKVISVAQPMSPAAARAERVAQRAAARRQARNDDEDYEDRREARRRK
YRMR
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgataaatccgtgcctgcggcacaaccaccaatgcttgctggtttgctgaaagtt
gctgctaccgatccaaagatcaaaggtctgctccagcatgttggcgaacctcatttgcac
atcacaggcattgatcaggcacggccgtgggcgatcgctgcgttggcacaccgtgcgccg
gtactcgtggttaccgctacggggcgtgaagcagaggatttatctgctgagctgcgcgcc
atgttgggggagaaggtggcgtggtttccggcatgggagacgttgccgcatgaacgtttg
agcccaggtgctgatattgctggtcagcgggctcgtattttgtctcatatcgcagactat
tcagtggttgtcacagcagctcgtggtttgagccaaccaatcgtgtcgcaagttgctggc
cgtgacccgttggtattggaacttgattccgaatgtagtttggaagaagcgacgcagcag
ctggttttcagggcgtatcaccacgtggacttggtggccaagcgcggtgaatttgctact
cgtggtggcattttggatgtgttccccacgaccgcgcagcatcctgttcgcgtggagttt
tggggtgatgaggtctcagaaatccgcggtttccaggtagccgaccagcgggcaatccct
gattcggatgtgccacgcgtggagatcttccctgcaagggaattaccaattaccccagaa
atcgcgcaacgcgcagctgagctcgctgtgaagttccaaggaaacccaacgctgcaagag
ctactggctaaaatttctgactctatcccatcagatggcatggaggccttgatcccagcg
ttgattgatcaacccatggtcacccttgctgaactcatgcccgaaaacacgcatgttgtg
gtggtcggaccagaaaagattcgtacccgtgtagcagatcttcaagctacggatgccgag
tttttggccgccggctgggaagcggccgcaatgggggcagatggtcccgtggcaacgcgt
ggccttgaccttgatgctagctcctaccgttcttatgaatcgctggaaaaaaccgcgcag
aagcacaacatgccgtggtggacatttgcacctcctggcatgtttgaagcctcggatggc
gacaccctccccttggaatttgagccggggcccacaccgcgtggcgatctcgaacagatc
gatcagatgatggccttgctcctcgcacacactcgcgacggtggggcagcagcatttatt
gcccccgcccaaggtgccatcaaacgcatggtagaacgcttcaaagagcagggaatcccc
acgaaggtagccacacctggctggcagccaaccttgggtgaagtaacgctgtatcaggcg
atgagccatgcaggtttggtgttccctaaggtgcgaaagcagcctggaaaaccagcatta
ccactggtagtaattacagaaaccgacctgactggtaaccgagttggtgacattgctggt
gcgaagcgtcgcccagccaagcgccgccaccgtgtggacccgctcgcgttgaaaaccggc
gactatgtggtgcatgaaacccacggcatcggccggttcctcaagatgaccgagcgcgtg
atccaatccggtgatgagacttcgcgccgcgagtacatcgttctggaatatgcggcgtcg
aaacgcgggcagccagccgatcaactgtatgtgcccatggattccctcgacatgctgagc
aaatatgtcggtggcgaaaagcccacgctatctaaaatgggtggctcagactggaagaac
accaaaaagaaggctcgtgccgcggtacgagaaatcgccggcgaactcgtcgaactctac
gctaagcggcaatccgcgccggggcatgcctttgcgcctgattccccgtggcagcatgag
atggaagataacttcccctacgtggaaaccgaagatcagatgctcgccatcgatgcggtg
aaagcggatatggaaaagccttcgccgatggaccgtgtggtggtcggcgatgtcggttac
ggcaaaaccgaggttgctgtgcgcgctgcattcaaggcggtgcaagatggccgacaagtg
gtggtgcttgttcctacaaccctgcttgcccagcagcatctgagcacctttgaagaacgc
atggctggattccctgtcacgatcaagggactgagccgttttacctctcctagcgagtcg
aaggaaattcttaaagggcttgccgacggctccgtcgatattgtgatcggtacgcaccga
ctgttgcagacgggtgtgcagtggaaaaaccttggcctcgtgattgtggatgaggagcag
cgttttggtgtggagcacaaggaacacatcaaggcgttgcgtacccatgtggacgtgctc
accatgtcggcgactccgattccgcgaaccttggaaatgtcgatggccggtatccgtgag
atgtcgactatcttgactccacctgaagatcggcacccgattttgacctatgtgggcgcc
caagaagataaacaagtagctgcagctattaggcgtgagctgcttcgcgacggccaagtg
ttctacgtgcataacaaagtctcagacattgagaaaaaggctcgtgaactgcgtgaacta
gtccctgaagcacgcattgtggtggcccacggacaaatgagcgaagagctactagaacaa
accgtccaaggattctgggaccgtgagtatgacgttttggtatgtaccacgatcgtcgaa
actggcttggacatcgcgaacgctaacacgcttattgtggaaaacgcccaccacatgggt
ctgtcgcagttgcaccagctgcgtgggcgagtagggcgttcccgcgagcgtggctacgct
tacttcttgtaccccaagggcgccacgttgacggagaactcctacgaccgccttgccacg
atcgcacaaaacaacgatcttggtgctggtatggcggtggccatgaaagacttggaaatg
cgtggtgccggcaatgttttgggcgcgcagcaatcaggtcacatcgccggagtgggcttt
gacctgtatgttcgcttggttggcgaggcggtcgaggcctaccgtgcactagctgacggc
aaggttgttgatgccacggaacaaggaccaaaagaaatccgcatcgatttgcctgtcgac
gcccacatccccgaggactacatcaactcagaacgcctgcgcttggaggtgtatcgcaaa
ctctctgcctctaccagcgatgaagatttggccttggtggtcgaggagatgaaagaccgt
ttcggtcccgttcccgacgaggtaaagcgactgctggcggtgtcgcgtctgcgtcatcta
gcacgcgcgacggggctaagtgatattggtgtgcagggcacacgcatcaagctacatccg
gtggaattgactgattccaagcaggtgcgtctcaagcgtctggcaccatctgcgacatac
cgtgcggctgccaaagcgatccagctaccgttccccaaagaaggcgcgaaggtaacggac
aaacagcttcgcgatgttgagctgctgcagtgggttgccgacttcattgcggaaatgttc
gagcatgatcgggtttccgtgacgggagagaagctaccggaaaaggttatttcggtggca
caacccatgagtcctgctgcggcgcgtgcggagcgcgtagcgcaacgggcagcggcgcgt
agacaagcgcgaaatgacgatgaggactacgaagatcgtagagaagcgcgacgtaggaaa
taccgaatgcgttaa
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