Crassostrea gigas (Pacific oyster): 105318609
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Entry
105318609 CDS
T03920
Name
(RefSeq) cys-loop ligand-gated ion channel isoform X1
KO
K05185
gamma-aminobutyric acid receptor subunit epsilon
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
105318609
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
crg04040
]
105318609
Ion channels [BR:
crg04040
]
Ligand-gated channels
GABA-A
105318609
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
DUF5367
Motif
Other DBs
NCBI-GeneID:
105318609
NCBI-ProteinID:
XP_011414116
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Position
LG7:58302746..58331378
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AA seq
479 aa
AA seq
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MLILDDIVFHTKNKMTSVAYSYMTLDTVAHGGVPGNRKSSAYRQPHSRESSVTSGSLSRN
YSSKKRKKRKSENKNKVKVQICVQFFKVGEIDTLKEQFTADVVVKAKWREPTLDGQNKTS
ESIEFNKFWNPKLYIENSLGDPKEQIRYRLLYNDKGEAFITEKRVIKGTFMENLELDDFP
FDVQDLTITVASELPSYEVELIEDLDDHHVVNKQSFVDEQEWHLYMHTECSRRDLVIDQA
DNSVRRSALSVKCRAARRPGYFVWNIFLVTFLICTLAFATFSVEKKLPQNRLQLSFTLVL
TAVAFKSVVNSSLPRISYLTYMDKYLLAAMIMLSAVCVWHALVTVVKETIADKAETIVLI
SLGIIYVIYNVGFLIIIYLYPWKKRRTMAQKDRDYTINCAAQYSISRPERFDSYRGRRKL
SALLKQAGRSTVGEEQVVARRKDSGCGLSEVLHCNPSSAVDLLSVSTTLDKRTEQEEAM
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgttgatactcgatgatattgttttccataccaagaataaaatgacgagtgtcgcctat
agttacatgacccttgatactgttgcacatggcggggtgcccggaaacaggaagtcctcc
gcctaccgccagccgcactcccgggagagctccgtcactagcggcagtttgagtagaaac
tactcgtccaaaaagaggaagaaaaggaaatcggagaataagaacaaggttaaggtccag
atctgtgtgcagtttttcaaagtcggcgaaatcgacacactaaaggagcagtttacagcg
gatgttgttgtgaaagcgaaatggagggaaccaactctagatggtcaaaataaaacgtct
gaatccatagaattcaataaattctggaatcccaaattgtacatagaaaattccctgggc
gatccaaaggaacaaattcggtaccggcttctgtacaatgacaaaggagaagcattcatc
acagagaagcgggttattaagggaactttcatggagaatctggaattggatgatttccca
tttgatgtacaggacttaaccataaccgtggcttccgagctgccgtcctatgaagtggaa
ctaattgaagacttggatgaccaccatgtggtcaacaaacaatcttttgtggatgaacaa
gaatggcatttatatatgcacaccgagtgttctcgaagggaccttgtgatagaccaagcg
gacaacagtgtccggcgttcggctctttccgtgaaatgtcgggctgcccgaagaccgggt
tattttgtatggaatatattcctagttacatttttaatatgcaccctagctttcgccacg
ttttcggtggagaagaaattaccccagaaccgcctgcagttatccttcactttggtgctc
acagcagtagctttcaagtcagtggtcaattccagccttccaagaatatcctacctaact
tatatggataaatacctactagccgccatgatcatgttgtcggcagtctgtgtgtggcac
gcactggtcactgttgtcaaggaaacaatagcagacaaggcagaaacgatcgtcctcatc
tccctcggaatcatctacgtcatctacaatgtcggcttcctcatcatcatctacctttat
ccgtggaagaaaagaagaacaatggctcaaaaagacagagattacacgataaactgcgct
gcccaatattcaatatctcggccggagaggttcgactcatatagaggaaggagaaagtta
tcggcccttctgaaacaagcaggaaggtctacggttggtgaagagcaagttgtagcgaga
agaaaagactccggatgtggcctttctgaagtcctccattgtaacccgtcgtccgccgtc
gatcttctctcggtctcgacgacactcgacaaacggacggaacaggaggaagccatgtaa
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