Crassostrea gigas (Pacific oyster): 105326854
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Entry
105326854 CDS
T03920
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105326854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105326854
Enzymes [BR:
crg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
105326854
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105326854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
MMR_HSR1
TniB
ATP_bind_1
AAA_16
AAA_24
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105326854
NCBI-ProteinID:
XP_011425375
LinkDB
All DBs
Position
LG9:complement(21620147..21631908)
Genome browser
AA seq
425 aa
AA seq
DB search
MSEEKSVEEYRLNADEELRFEVEANASVQMELLEGMAEVFGSELTKGKVYNFDQGSKVAV
FTWHGCLIKLQGRTEVAYVAKETPMVMYINTHAALEQMREKAESDNTRGPRVMVVGPTDV
GKSTLTRLLCNYAARLGRAPLFVDLDVGQGQVSIPGTIGSVVVERPADVEEGFHLNAPLV
FHYGHTAPSTNPQLYKLIVSRMAEVTNLKCEKQRKVSISGVVINTGGWIKGGGYDSLKHA
AGSFEVDVIIVLDQERLYNELKRDMPEFVKVILLPKSGGVVERNQHQRSDARDSRIREYF
YGVKINGKDSFFPHPMDIPFSSVKLYKIGAPALPDACLPLGMKSQDNKLKLVPIRPGINI
LHHVFSVSSAASVEDNVIESNTLGHVVISGLDTEKETFNILSPSQNPLPNDILLILDLQF
MDIEI
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaggaaaagagtgttgaggagtacaggcttaatgcagatgaagaactgcgattt
gaagtggaggccaatgcttctgtacaaatggagttgttggagggtatggctgaggtgttt
ggatctgagttgaccaagggcaaagtctacaactttgatcagggctccaaagtggctgtg
ttcacctggcatggctgtttaatcaaactgcaaggaagaaccgaggtggcttatgttgcc
aaggaaactccaatggtgatgtacataaacactcatgcagccctggaacagatgagagag
aaggctgagagtgacaacaccaggggaccaagggtgatggttgttggaccgactgatgta
gggaagagcacactgacccgtctcctgtgtaactacgccgccagactggggagggcaccg
ttatttgttgacctagatgtcggacagggtcaggtgtctataccagggacaattggctcg
gtggtggtggaacgaccagcggatgtggaggaaggtttccacctgaatgctccactagtt
ttccactatggccacacggctccatccaccaacccacaactgtacaaactcattgtgtcc
agaatggcagaggtcacgaacttgaagtgtgagaaacaacgcaaagtcagcatcagtgga
gtggtcattaacacaggggggtggatcaaaggtggtggatacgactcgttaaagcatgca
gcagggtcctttgaagttgatgtgatcatagttcttgatcaggagaggttgtacaacgag
ctgaaaagagacatgcccgaatttgtcaaagtcatccttctacccaaatctggtggagtg
gtggagaggaaccagcatcagagatcagacgccagggattcccgcatcagggagtacttc
tacggagtcaaaatcaacggcaaggactcgttcttcccccaccccatggacatcccattc
agctccgtcaaactgtacaaaatcggagcccctgccttacctgatgcatgcctacctctt
ggaatgaagtcacaggacaacaaacttaaactagtacccattagaccaggaattaacatc
cttcaccatgtgttcagtgtcagttcagcagccagtgtagaagacaacgtcatagaatct
aacacccttggccatgttgtcatatctggtttagacacagaaaaagaaactttcaacatc
ctgtctccttctcagaaccctctccctaacgacatactcctcatattggatctacagttc
atggacatagagatctga
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