Citrobacter rodentium: ROD_16271
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Entry
ROD_16271 CDS
T01145
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent helicase HrpA [EC:
5.6.2.6
]
Organism
cro
Citrobacter rodentium
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
ROD_16271 (hrpA)
Enzymes [BR:
cro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ROD_16271 (hrpA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
ResIII
AAA_16
NTPase_1
AAA_11
PhoH
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CBG88388
UniProt:
D2TJH2
LinkDB
All DBs
Position
complement(1734375..1738220)
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDRQRFSRRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGKVLLREAARPAIAYPENLPV
SQKKQAILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAARTVA
NRIAEELQTEPGGCIGYKVRFSDRVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPQRFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVEELGQESPGDILIFMSGEREIRDTADALNKLNLRHTE
VLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIVTSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATEKVTLYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGSLKL
RLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVTPLELTLLDALERELRRMTGVTVDREDWHLEQVPDHLKVTFRIVDEK
NRKLQEGRSLTELKEALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQQQAMWSGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISS
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgatcggcagcgcttctcccgccgcctccacggcgtgaaaaaggttaaaaat
cctgatgcacaacaggccatttaccaggagatggcgaaagagattgaacaggcagcaggc
aaggtcttgctacgcgaagcggcgcggcctgcgatcgcttatccggaaaaccttcccgtc
agccagaagaaacaggcgattcttgaagccgttcgcgatcaccaggtggtgatcgtcgcc
ggggaaaccggatcggggaaaacgacccagttgccgaaaatctgtatggagctggggcgt
ggggtaaaagggctgatcggccacacccagccgcgtcgtctggcggcccgtacggtggct
aaccgtattgctgaagagctgcaaacggagccgggcggctgcattggctataaagttcgt
ttcagcgatcgcgtcagcgacaatacgatggtcaagctgatgaccgacggtattctgctg
gcggaaatccagcaggatcgcctgctgatgcagtacgacaccatcattatcgatgaggcg
cacgagcgcagcctgaacatcgattttctgcttggctacctgaaagagctactgccgcgt
cgcccggatctgaaaatcatcatcacctcggcaactatcgatccgcagcgtttttcgcgc
cactttaacaatgcgccgattatcgaagtgtctggccgcacctatccggtggaagtgcgc
tatcgcccgattgtcgaagaggcggatgacaccgagcgcgatcaattacaggccattttc
gatgcggtggaagaactggggcaggaaagtcccggcgatatcctgatctttatgagcggc
gagcgtgaaattcgcgacaccgccgatgcgctcaacaagctcaatctgcgccataccgaa
gtgctgccgctgtatgcccgcctttccaatagtgaacagaaccgggtgttccagtcgcac
agcgggcgacgcatcgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccgggc
atcaagtacgtgattgaccccggcaccgcgcgaatcagccgttacagctaccgcaccaaa
gtgcagcgtctgccgattgagccggtgtcgcaggcctcggcgaaccagcgtaaaggacgc
tgtggccgcgtctccgaaggtatctgcattcgtctctattctgaagatgatttcctgtcg
cgcccggaatttaccgatccggaaattttgcgtaccaacctggcctccgtcattttgcag
atgaccgcgctggggctgggcgatatcgccgcgtttccgtttgttgaagcgccggataaa
cgcaacatccaggacggcgtgcggctgctggaagaactgggcgccattaccaccgatgaa
caggccagcgcatataagctgacgccgctgggccgccagctttcacaactgccggtcgat
ccgcggctggcgcgtatggtgctggaagcgcaaaagcatggctgcgtgcgtgaggcgatg
atcgtcacctccgcgctctccattcaggacccgcgcgagcgcccgatggacaagcagcag
gcctcggatgagaagcatcgccgcttccatgataaagagtccgatttcctcgcctttgtg
aacctgtggaattaccttggcgagcagcaaaaagcgctctcttcgaacgcgttccgccgc
ctgtgccgtacggattacctcaactatctgcgcgtgcgcgagtggcaggatatctacacc
cagctgcgtcaggtggtgaaagaactgggtattccggtaaacagcgaacccgcggagtat
cgcgaaattcatatcgcgttactgaccggtctactgtcgcatatcgggatgaaagacgcc
gataagcaggaatataccggcgcgcgcaacgcccgtttctctatctttcccggttccggt
ttatttaaaaagccaccaaaatggacgatggtcgcagaactggtggaaaccagccgtctg
tgggggcggattgccgcgcgaatcgatccggaatgggtggagccggttgctcagcacctg
attaagcgctcttacagtgaaccgcactgggagcgagcgcagggcgcggtcatggcgacc
gagaaagtgacgctttacggtctgccgattgtcgccgcgcgaaaggtcaattacagccag
atcgacccggcgctgtgtcgcgagctgtttatccgccatgcgctggtggagggggactgg
cagacccgtcatgccttcttccgtgaaaacctgaagctgcgcgctgaagttgaagaactg
gagcataaatcacgccgtcgcgacattctggtggatgacgagacgctgtttgagttttac
gaccagcgtatcagccatgacgtcatctccgcgcgccatttcgacagctggtggaagaag
gtcagccgcgagacgccggatctgctcaactttgaaaaaagtatgctgatcaaagagggc
gcggaaaaaatcagcaagctggattaccccaacttctggcatcagggcagcctgaagctg
cgcctgagctaccagtttgagccgggcgcggacgccgacggggtgaccgtgcatattccg
ctgccgttgctgaaccaggtggacgagagcggctttgaatggcagatacccggacttcgt
cgggaactggtgatcgcgttgatcaagtcgctgccaaaaccggtgcgccgcaactttgtg
cccgcgcccaactacgccgaagcgtttttaggccgcgttacgccgcttgagctaacgctg
ctggatgcgctggagcgcgaactgcgccggatgaccggcgtgacggtggaccgtgaagac
tggcacttggaacaggtgcccgatcacctgaaagtgacgttccgtatcgttgacgagaag
aacaggaaactacaggaaggacgttcattaactgagctgaaagaggcgctgaaggggaaa
gtgcaggaaacgctctccgcagtggcggatgatggcatcgaacagagcgggctgcatatc
tggagctttggacaactgccggaaagctacgagcaaaaacgcggcaactataaggtgaaa
gcctggcccgcgctggtggatgaacgcgacagcgtggcgatcaaactgtttgataatccg
ctggagcagcagcaggcgatgtggtcgggcttacgccgtttgctgttgctgaacattcca
tcgccaatcaagtatctgcatgagaagttgccgaacaaagccaagctggggctgtacttt
aacccgtacggtaaggtgctggagctgattgacgactgtatctcctgcggcgtcgacaaa
ctgattgacgccaacggcggcccggtctggacggaagagggcttcgcggcgctgcatgag
aaggtgcgcgctgagctgaacgatacggtggtggatattgcgaagcaggttgagcagatc
ctcaccgccgtcttcaatatcaacaagcgtctgaaggggcgggtggatatgaccatggcg
ctgggactgtcggatattaaagcgcagatgggcggactggtgtatcgggggtttgtgacc
ggcaacggttttaaacgtctcggcgacacgctgcgttacctgcaggcaattgaaaaacgc
cttgagaaactggccgtcgatccgcaccgcgaccgcgcacagatgctgaaagtcgaaagc
gtgcagcaggcgtggcagcagtggatcaataagctgccgcctgcgcgccgtgaagatgag
gatgttaaagagatccgctggatgatcgaggagctgcgggtcagctactttgctcagcag
cttggtacgccgtatccgatttcggataagcgtattttacaggcgatggagcaaattagc
agttaa
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