Camelina sativa (false flax): 104716543
Help
Entry
104716543 CDS
T05044
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03020
RNA polymerase
csat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104716543
09124 Replication and repair
03420 Nucleotide excision repair
104716543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104716543
03400 DNA repair and recombination proteins [BR:
csat03400
]
104716543
Enzymes [BR:
csat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104716543
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104716543
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104716543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
104716543
NCBI-ProteinID:
XP_010432227
LinkDB
All DBs
Position
10:2144301..2152788
Genome browser
AA seq
1836 aa
AA seq
DB search
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI
DRKVKCDTCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK
FKQAMKIKNPKNRLKKILDACKNKTKCDGGDEMDDVHNKDTDEPVKKSRGGCGAQQPKLT
IEGMKMIAEYKIPRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLLRYSAWHSDSETGFITPGDTQVRIERGELLAGTLCKKALGTSNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLETDRF
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV
PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI
MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDVEGGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPTSGT
PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSGYSPTSPVYSPTS
PTYSPTSPTYSPTSPTYSPSSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPAYSPTSPGYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYSPS
NARLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYSP
TLPGYSPSSTGQYTPHEGDKNDKTGKDVCKNDKSNP
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggatacacgttttccgttctctccggccgaggtttccaaagtccgggtggtccagttt
ggcatcctcagccccgatgagatcaggcaaatgtctgttatacatgttgagcatagtgag
acgacagagaagggtaaacctaaggtgggagggttgagtgatatccggcttggtacgatt
gatcggaaggtgaagtgtgatacatgtatggctaatatggctgagtgccctgggcacttt
ggccatctcgagctcgccaagccaatgtatcatgtcggttttatgaagactgtgttaagt
atcatgagatgtgtctgcttcaattgctccaagattttagctgatgaggaggagcacaag
tttaagcaggctatgaagataaagaatcccaaaaacaggcttaagaagattctggatgct
tgcaaaaacaagaccaaatgtgatggtggtgatgaaatggatgatgtccataacaaagac
acggacgaacctgtaaaaaagagccgtggtggatgtggtgcacagcaaccaaagctgact
attgaaggtatgaagatgattgcagagtacaaaattccaaggaagaaaaccgacgagccg
gatcagcttccagagcctgcagaaaggaaacagacacttggtgctgatagggttttgagt
gttttaaagaggattagtgatgcggattgccaactattagggttcaaccctaagtttgct
cgccctgactggatgattcttgaagtcctccctattcctccacctcctgtcagaccatct
gtaatgatggatgccacttccagaagtgaggatgacttgacccatcagctagccatgatt
attcgacacaatgagaacttgaaaagacaggaaaaaaatggggcgccagctcatattata
tcagagtttacacagctcttgcagtttcatatagctacctattttgataatgagttacct
ggacagccaagggctactcaaaaatcagggaggcctattaagtcaatatgtagtaggctg
aaggcaaaggaaggcagaatcaggggaaacttgatgggaaaacgtgttgatttttcggca
cgtactgttattacaccagatccaacaattaatatcgatgagcttggtgtaccgtggagt
attgctctgaatctcacatacccagaaacagtgactccatataacattgaaagattaaag
gagctcgttgattatgggccacatcctccacctggcaagactggagcgaaatatatcatt
agggatgatggccaaaggctagatctccggtacctgaaaaagagcagtgatcatcatttg
gaacttggatacaaagttgagcggcatttacaggatggtgattttgttctgtttaatcgt
caaccaagtctgcacaaaatgtcaatcatgggtcacaggattcggattatgccatattcc
actttccgtctgaatttatctgtcacttcgccttacaatgctgatttcgatggggatgag
atgaacatgcatgtaccacaatcattcgagaccagagccgaggtgttagagctgatgatg
gttcctaaatgtattgtgtctccccaggcgaatcggcctgtgatgggaattgttcaggat
actctactagggtgccgtaaaattacaaaaagagataccttcatagagaaggatgtattc
atgaatacgcttatgtggtgggaagatttcgacgggaaagttccagctcctgcaattctg
aagccacgtcctctttggactggcaaacaagtttttaatcttatcatcccaaaacagata
aatctgttgaggtactctgcctggcactcagattcagagactggattcataactccgggg
gatactcaagtgcgaattgaaagaggggaacttcttgccggaactctttgcaaaaaggcc
cttggtacatctaatggaagtctcgtgcatgtcatttgggaagaggttggtcctgatgca
gccaggaaattccttggtcatactcagtggcttgtcaattactggcttctgcagaatggt
tttaccattggaattggtgacacaattgctgattcatcaacgatggagaaaattaatgaa
actatttctaacgcaaaaactgctgtgaaagatcttatccggcagttccaggaaaagaaa
ttggaccctgaacccggccgaactatgacagagacatttgagaacagggttaatcaggtc
ttgaataaagctcgtgatgatgctggaagtagtgctcaaaagagtttagcagaaaccaat
aaccttaaggcgatggtgacagcaggatcgaaaggaagtttcattaatatttctcaaatg
acagcgtgtgtcggccagcaaaatgttgaagggaagcggattccatttggatttgatggt
cgaacattgccacatttcaccaaagatgattatggtcctgagagtcgtggatttgtagag
aattcgtaccttcgtggtctgacacctcaagagttctttttccatgccatgggaggaagg
gaaggtcttattgatactgctgtgaagacatcagaaactggatacatccagaggcgtttg
gtaaaggctatggaggatattatggttaaatatgatgggacagtccggaactcgttgggt
gatgttattcaatttctctatggtgaagatggtatggatgctgtatggattgaatcacag
aagctggattccttgaaaatgaagaaatcggagttcgataggactttcaagtatgagatc
gacgatgaaaactggaatcctacatacttaagtgatgaacatctcgaggacttgaaaggg
attcgggagttgcgtgatgtatttgatgcggaatatcagaaacttgagactgacagattc
caactcgggacagaaattgcaacaaatggtgatagcacttggccattgcctgttaacatc
aagaggcatatctggaatgcgcagaagactttcaagatcgacttgcgcaagatttcggat
atgcaccctgttgaaattgtagatgcggttgataaactacaagagaggctgttggttgtt
cctggtgatgatgcattgagtgtggaagcacagaaaaatgcaacactgttctttaacatt
ttgcttcgcagcactcttgctagtaaaagagtattggaggaatacaagctcagccgcgag
gcttttgagtgggtaattggtgaaatagaatcgagatttttacaatcgctagtggcccca
ggggaaatgattggttgtgttgctgctcaatcaattggagaacctgctacgcagatgact
cttaacaccttccattatgctggtgtcagtgcaaagaacgttacactcggtgttcccagg
ttgcgtgaaattattaatgtagctaaaaggatcaaaacaccgtccctatcagtctatctc
acaccggaggctagcaaatcaaaagagggggctaagactgttcagtgcgctttggagtat
actactctcaggagtgtcactcaagctacagaagtctggtatgacccagatccaatgagt
actatcattgaggaggacttcgaatttgtgaggtcctactatgaaatgccggatgaagat
gtttctccggataaaatatctccttggctgcttcgtatagagttgaatcgcgagatgatg
gttgataagaaattgagtatggcggatattgcggaaaagatcaaccttgagtttgatgat
gatctgacttgcatattcaatgatgataatgcccaaaaactgatccttcgaattcgcatt
atgaacgatgaggggcctaagggagaattgcaagatgaatcagctgaagatgatgttttc
cttaaaaagattgagagcaacatgctgacagaaatggcgctcagaggtattccagacatc
aacaaagttttcattaaacaagttagaaaaagcaggtttgatgtggagggtggatttaag
acatctgaagagtggatgttagatacagaaggtgttaatctcttagctgttatgtgccac
gaagatgtggatccaaagaggacaacaagcaatcacttgattgaaattattgaagttctc
ggaatcgaggcagttcgccgtgctttgttggatgaactccgggttgtgatttcctttgat
ggctcttatgtgaattaccgccatcttgccatcttgtgtgataccatgacatatcgcggt
catctaatggctatcactcgacatggtatcaatagaaatgacactgggcctctgatgaga
tgctcttttgaagaaacagttgatattctgttagatgctgcagcttatgctgagacagac
tgcttgcggggtgttactgagaatataatgctgggtcaacttgcaccaattggaacagga
gattgtgaactgtatctgaatgatgagatgttgaagaatgctattgaactccagctccct
agctatatggatggtctggaatttggaatgactcctgctcgatcaccaacatcaggcact
ccttaccatgaaggcatgatgtccccgaactacctgttgagtccaaatatgcgtttgtca
ccaatgtcagacgcacagttttctccatatgttggcggaatggccttttcaccttcttca
tctccaggctatagcccgtctggatacagtcctacttcacctgtatatagcccgacttcg
cctacctacagccccacttcgcctacctacagtcccacttcgcctacctacagtcccagt
tctcctgcctatagtccaacaagccctgcttattctcctacaagtccttcctattctccc
acctctccgagctacagccccacgtctccaagctatagtccaacgtctccaagctacagc
ccaacatccccaagttacagcccgacttcgcctgcttacagcccaacatcacctgcttat
agcccgacttcacctgcatacagtccgacctctccttcttacagtccaacttcgccatct
tacagtccaacatcgccttcttacagccctacctcaccatcctatagtcccacatcacca
tcttatagtcctacttcacctgcatacagccccacttcacctggctacagccccacttca
cctggctacagcccaacttcaccaagttacagtccaacatcaccaagctatggtcctacg
tctccaagctacaaccctcagtctgctaaatatagcccatctcttgcttactctcctagc
aatgcaagactatcaccatctagtccctacagtcctacatctccaagctacagcccgaca
tcgccatcatactcacccacatctccatcttattcaccttcgagtccaacatacagtccc
agcagcccttacagctcaggagcaagccctgactacagcccaagcgcaggctactcgcca
acacttccgggttattcaccatcatccacgggtcagtatacaccacatgagggcgataaa
aatgacaagactgggaaagatgtctgtaagaatgataaaagcaacccttga
DBGET
integrated database retrieval system