KEGG   Camelina sativa (false flax): 104739397Help
Entry
104739397         CDS       T05044                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03030  DNA replication
csat03410  Base excision repair
csat03420  Nucleotide excision repair
csat03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104739397
   03410 Base excision repair
    104739397
   03420 Nucleotide excision repair
    104739397
   03430 Mismatch repair
    104739397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csat03032]
    104739397
   03400 DNA repair and recombination proteins [BR:csat03400]
    104739397
Enzymes [BR:csat01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104739397
    6.5.1.6  DNA ligase (ATP or NAD+)
     104739397
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     104739397
DNA replication proteins [BR:csat03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    104739397
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     104739397
DNA repair and recombination proteins [BR:csat03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     104739397
   NER (nucleotide excision repair)
    Other NER factors
     104739397
   MMR (mismatch excision repair)
    Other MMR factors
     104739397
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-GeneID: 104739397
NCBI-ProteinID: XP_010458041
LinkDB All DBs
Position
14
AA seq 791 aa AA seqDB search
MLAIRSSNCLRYVHCLATKTQFSSVLLSFSRRVSHLRLSSCHRAMSSTRPSAFDALMSNA
RAAAKKKTPQTSTALSRSPNKRKIEETQDADLAKPLVYEGTLSKTEDPVEPVSDSAKPRS
DTSSIAEDSKTGAKKSRTLSKADKIGEMKSKIGLLKKKPNDFDPEKVSCWEKGERVPFLF
LALAFDLISNESGRIVITDILCNMLRTVIATTPEDLVATVYLSANEIAPAHEGIELGIGE
GSIIKAISEAFGRTEDQVKKQNTELGDLGLVAKGSRSTQTMMFKPEPLTVVKVFDTFRRI
AMEAGKDSTEKKKNRMKALLVAATDCEPLYLTRLLQAKLRLGFSGQTVLAALGQAAVYNE
EHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPM
LAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMEDGTFEIYSRNAERNTGKYPDVAI
ALSRLKKPSVKSFILDCEVVAFDREKNKILPFQILSTRARKNVNVNDIKVGVCIFAFDML
YLNGQQLIQENLNIRREKLYESFEEEPGYFQFATALTSSDIDEIQKFLDASVDVGCEGLI
IKTLNSDATYEPAKRSNNWLKLKKDYMDSIGDSMDLVPIAAFHGRGKRTGVFGAFLLACY
DVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVITTPKPYYRVGDGLTPDVWFEPTEVWE
VKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQIADMYQAQKHN
HPSNDVKGEDD
NT seq 2376 nt NT seq  +upstreamnt  +downstreamnt
atgttagcaattcgatcatcaaattgcctccgatacgtacattgtctcgctactaaaact
caattctcctccgtcttgctctcttttagccgcagagtttcccacttgcggcttagctcg
tgccacagagccatgtcttctacccgcccttctgcatttgacgctcttatgtccaatgct
cgcgcagctgccaagaagaagacgcctcagacctccactgccttgtctcgctcgccgaac
aaaaggaaaattgaggaaacccaagacgctgatttggccaaacctcttgtctacgaaggt
acactatcgaaaactgaggatcccgtagagcctgtttctgattccgcgaaacccagatcg
gatacgtcgtcgattgcggaagattccaagaccggagcgaaaaagtctaggactttgagc
aaagctgataaaattggcgagatgaagagcaaaattgggttgttgaagaagaagcctaat
gatttcgatcctgagaaagtgtcttgttgggagaaaggggagagagttccgtttctgttt
cttgcgttggcttttgatctgatttcaaatgaaagtggtcgaattgtgattactgatatt
ttgtgtaacatgttgagaactgttattgccactacaccggaggatttggttgctactgtt
tatctttctgccaatgagattgctcctgctcatgaaggtatagaattgggaattggagag
ggttcaatcatcaaggcaatctctgaagcttttggtaggactgaggatcaggttaagaag
cagaatacggaactgggagacttggggcttgtagcaaaaggaagccgttcgactcagact
atgatgtttaagcccgaaccgttgactgttgttaaggtttttgatacgtttcgacgaatt
gctatggaagctggaaaagatagtacggaaaagaagaagaaccggatgaaggcacttctt
gtggcagcaacagactgtgaacctctttacttaacacgtttacttcaggcaaaattacgt
ttagggttctcaggtcagactgtcttagctgccttgggacaagccgctgtatataatgaa
gagcactcaaagccaccgccaaataccaagtctcctttagaagaggctgcgaagattgtt
aaacaagtattcacggtgcttcctgtctatgacattattgttcctgcccttctatctggt
ggtgtgtggaatcttccaaaaacttgtaactttacactgggtgttccaattggacccatg
cttgcaaaaccaaccaaaggtgtagcagagatactgaataaattccaggacatcgttttc
acatgtgaatacaaatatgatggagaacgtgcacagatacattttatggaggatggtaca
tttgagatatacagtcgaaatgctgaaagaaacactgggaagtacccggatgttgcgatt
gcgttatcaagattaaagaagccctctgtgaagtcttttattttggattgtgaggttgtt
gcttttgacagggagaaaaataaaattcttccgttccagattttgagcactcgagcccgt
aaaaatgtgaatgtcaatgatattaaggttggcgtatgcatctttgcttttgacatgtta
tatctaaatggccaacaacttatccaagagaatcttaatattcgccgagagaagctatac
gaatcatttgaggaagagcctggctatttccagtttgcaactgctcttacatctagcgat
atcgatgaaatccaaaagtttcttgacgcatctgttgatgttggctgtgaaggtttaatc
attaaaacattgaactcggatgctacctatgaacctgcaaagcgatcaaataattggcta
aaattgaagaaagactacatggacagcattggagactctatggatcttgtaccaattgct
gctttccatggacgtggcaaacgtacaggtgtctttggtgcatttttactcgcttgttac
gatgttgataaggaggagttccaaagcatttgtaaaatcggtactggattttctgatgcc
atgcttgacgagaggtcgtccagtcttcgctctcaagtgataactactccaaaaccatac
taccgagttggagacggcctcactccagacgtttggtttgagcccactgaggtatgggaa
gtgaaagcagctgacttgacaattagccctgtgcaccgtgcagctaccggcattgtggac
cctgataagggaatttctcttcgttttcctcgtctactccgtgtacgggaagacaagaag
ccagaggaagcaacatcatctgagcagattgcagatatgtaccaagctcagaaacacaat
catccaagcaatgatgtcaaaggtgaagatgattga

DBGET integrated database retrieval system