Camelina sativa (false flax): 104747902
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Entry
104747902 CDS
T05044
Name
(RefSeq) probable RNA-dependent RNA polymerase 5 isoform X1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csat03036
]
104747902
Enzymes [BR:
csat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
104747902
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
104747902
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RdRP
DUF4080
Motif
Other DBs
NCBI-GeneID:
104747902
NCBI-ProteinID:
XP_010467913
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All DBs
Position
15:29991056..29996524
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AA seq
992 aa
AA seq
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MITLRSSASSRSRIDLSGRIETALVNIYRKHNLPPINDETRQRLSSIPENLAFGLVCHVF
SLQFGVICNLDSFIVSTVNQAVGVTGSPPLSSGGSPAQSRIPSGGYVCRVLQEEMSVDSD
APSPKSLQREDIRGSLQIPQLVALGELEFKKAFLLLCYIPGQRLGEVKTAGGKVLTADEI
RQWKDLPMVAYEAAVWDSLGRFYCPQTDRSVLQWDTGKTHYYQCHVAPDGSYTFKGPLLE
NTGTHLHKVLGDENVLTVKFTDVQKKSSTYSSDRYFTYKGIAKNGIMVGLRRYQFFVFKD
GGKEDKSKDVSTKRAKCYFIRTDSTASIDMEKPYIFSGKSIYEARMHFMHVHTLPSLANY
MARFSLILSKTKKLEVDLTGVNFEIIKDIPCHDHDGKDVLDKNNKPCIHSDGTGYISEDL
ARMCPVNIFKGKCLRSENIKITISNFEGQEACGQEPPLLIQFRMFYNGYAVKGTFLLNKK
IPSQTVQVRPSMIKVLPDSLPNFSTFNALEVVNTSNPPKRTKLSRNLVALLSYGGIPNEF
FLDILLNTLEESKAIFYNKRAALNAALNYGEMDHQNAAQMILVGIPLDEPHLKNHLSILL
KTEKNDLKAGKLPVTESYYLMGTVDPTGELKEDEVCVILECGQISGEVLVYRNPGLHFGD
IHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDLYFISRNPELLEHFK
PSEPWVSLTPPSKSNSGREPSQFSPEELEEELFEIFLKAGFHASNVIGIAADSWLAIMDR
FLILGDERADEKAEMKQKMLELIDIYYDALDAPKKGATVYLPGNLRPDIFPHYMEREKKF
KSTSILGLIYDFVTTEQPSPSPEINKLQCFEDEPVSEFHMEKCRRWYGAYKAEMAHAMQT
DTTHADSVIESYKEEFYGAARFEDSKKSLEELYPQALALYNIVYDYAIYKGVSKCSFVWK
VAGPVLCSFYLKKKMQEKSLVCAPSVLKELWG
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgataactttacgcagcagtgcttcttcgaggtcaaggatcgatctttcgggtcggatt
gaaacggcgttggtgaatatttacagaaaacacaatcttcctccgatcaatgatgagacg
aggcagagactgtcttcgattccagagaatttggcttttgggttggtctgccacgttttt
agtttgcagtttggtgtgatatgcaacctcgacagcttcatcgtttctacggttaaccag
gccgttggtgtcactggctctcctccgctgagctccggtgggtctccggcacagtctcgt
atcccctctggaggatacgtgtgcagggttcttcaagaagagatgtctgttgattctgat
gctccttctcccaagtctttgcaaagagaagacattagaggatctctgcagattcctcag
ctggtagctttgggagaactcgaattcaagaaggcgtttctgttgctttgctatatccca
gggcaacgtttgggtgaggttaaaactgctggtggtaaggttttaactgccgatgaaatc
agacaatggaaagatttgcccatggttgcatatgaagcagcggtttgggacagcttgggc
cggttttattgtcctcaaactgaccgaagtgtgttacaatgggataccggaaagacccat
tactatcaatgccatgtagctcccgatggtagctacacatttaagggccctttactggaa
aacactggaacacacctgcacaaggtcttgggtgatgaaaatgttctaacggtcaaattt
acagatgtccagaaaaaatcgtcaacctattctagtgaccgttacttcacatacaaaggg
attgccaagaatggtatcatggttggtttgcgtcgttatcaattttttgttttcaaagat
ggagggaaggaagacaaaagcaaagatgtttctacaaagagagcgaaatgctactttata
cgcacagactctacagcttcaattgatatggaaaaaccctatatcttttctgggaagtca
atctatgaagctcgtatgcattttatgcatgtgcatacattgccgtctttggccaactat
atggcaaggttttctttgattctttcgaagactaagaagcttgaagttgatttgacagga
gttaacttcgaaataatcaaggatataccctgccatgatcacgatggtaaagatgttctt
gacaagaataacaaaccttgtatacattcagatggaactggctacatctctgaggacctt
gcccggatgtgtccagtaaatatatttaaagggaaatgtctcagaagtgaaaatattaag
attacgatttcaaattttgaaggacaggaagcatgtggccaagaaccgcctctgctgatc
cagtttcggatgttttataatggctatgctgttaagggaactttcctcttaaacaagaaa
attccttctcagactgtccaggttcgaccttctatgatcaaggtgttgccggattccttg
ccaaattttagtacctttaatgccctggaggtagtcaatacaagtaatccaccaaaaaga
acaaagctatcaagaaatttggttgcgctgcttagctatggaggaatccctaatgaattc
tttttggatatattgctcaacacgctggaagaatcgaaagccatattctacaacaaacgt
gccgcacttaatgctgcccttaattatggcgaaatggaccaccaaaatgctgcacaaatg
atattggttggtattccccttgatgaaccgcacttgaagaatcatctgtctattctctta
aagacagagaaaaatgatctcaaagcaggcaagcttcctgtgactgaatcttactatctc
atgggcacagtggatcctaccggagagctaaaggaagatgaagtctgtgtcatcctggag
tgtgggcaaatttcgggagaagtgttagtttatagaaatcctggattacattttggagac
atacatgttcttaaggctacatatgttaaggccttggaagagtatgttggaaattccaag
tatgctgtgttcttccctcagaaaggtccaagatccttgggagacgagattgcaggtggt
gactttgatggtgatctgtatttcatatcaagaaaccctgagctacttgaacacttcaag
ccaagtgaaccgtgggtgagtttgactcctcccagtaaaagtaactctggtagagagcca
agccagttttcaccagaagagttagaagaagagcttttcgaaatcttcctgaaggcagga
tttcatgccagcaatgttataggaatagctgcagatagctggttagcaataatggaccgc
ttcctcatactaggagatgagagagctgatgaaaaagctgaaatgaagcagaagatgcta
gagctaattgatatatactatgatgctcttgatgcaccgaagaaaggggctacggtctat
ctcccaggtaacctgaggcccgacatttttccacattacatggagcgggagaaaaaattc
aagtctacttctattcttggattaatctatgactttgttacaacagagcaaccctcacca
tcacctgagatcaataaactccagtgttttgaagatgagcctgtctctgagtttcatatg
gagaaatgtagacggtggtatggtgcttacaaagctgagatggcccacgcaatgcaaacg
gataccactcatgcagattcagttattgagagctacaaggaggagttctacggcgctgca
aggtttgaagacagcaagaaaagtctggaagaactctatccgcaagccctggcactctac
aacatagtatacgattatgccatttataaaggtgtttcgaaatgcagttttgtctggaag
gtagcaggacctgtcctgtgcagcttctatcttaagaagaaaatgcaagagaaatcttta
gtgtgtgcaccatctgtgcttaaagagctttggggttga
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