Camelina sativa (false flax): 104778458
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Entry
104778458 CDS
T05044
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104778458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104778458
Enzymes [BR:
csat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104778458
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104778458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104778458
NCBI-ProteinID:
XP_010501213
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All DBs
Position
3:28209147..28211987
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AA seq
690 aa
AA seq
DB search
MRRHKQWPLRPLLAYSFCSSAAERVSTSTAAAATAAFPLKHVTRSNFETTLNDLRALVKA
ADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSF
VSHPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRRQEEDA
SKRLETLYSEEGIDSSGETEDLKLVRLADVLFAERMKNMLNEWRTGLLHGGNVSSESPRI
SNGSTQSTETVFHHMRPALSLKGFTSHQLRVIISVLGKHFGDLVYLHSDDKSSCSQDFVV
YTESESDKENLMKEAKDERKRVGERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVY
SKFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQI
EFSSRSSDSHLQQRLKIDVEVDNIRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFT
QHSQSDNLAHNEKLEKYINRLYLSWTRGDIIDLRTGHTNADNWRVSKFKYENIVLIWNFP
RKLKAREIKECICKAFGSVSVISVYHIDDSAVFVLFKNSELVCDFLKLKRQLESSDGPVS
VLHPLSKILEGGNTGAADYEAYKEICSSHISEILFSDQAETVGVKSRTRPDPQDETDRRE
ESTVAVTHKASDLIDAFLANRVEVETATTN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggcacaagcaatggcctttgaggcctcttcttgcctacagcttctgctcttcg
gcggcggagagagttagtacctcaacggctgcggcggcgacggcggcttttccgttgaag
catgtgacgaggtcgaacttcgagacgacgctgaatgatctgcgtgcactcgtgaaggct
gcggatttcgtggcgattgacctagagatgactggcgtgacgagcgcgccgtggcgagac
tccttagagttcgaccgctacgacgtcagatacctcaaagtcaaagactccgccgagaaa
ttcgccgtcgttcagttcggcgtatgtccctttcgttgggattctcgaactcagtcattc
gtttcccacccgcacaatttctttgtatttcctcggcaagagctcacatttgatccacca
gctcatgagtttctctgccagacgacttccatggattttctcgccaagtatcaatttgat
ttcaacacttgcatacatgaaggaatatcttatttgtccagacgacaagaggaagacgca
agtaagcgtttggaaacgctatacagcgaggaggggattgattcatcgggtgaaacagag
gatttaaagttggtgcgattggcggatgttctattcgctgaaaggatgaagaacatgctg
aatgaatggcggactggcctgttacatggtgggaatgtatcctctgagtctccaaggatc
tcaaatggatcaactcagagtactgaaaccgtgtttcaccacatgcgtccagctctcagc
ctcaagggtttcacttctcatcagctcagagttattatctcggttttaggaaagcatttt
ggagatcttgtctacttacattcagatgataaaagttcatgttcacaagactttgtagtg
tacactgaatcagaatcggacaaggaaaatctcatgaaggaggcaaaggatgagcgcaag
agagtgggggaaagaaaaatacaatctgcaatcggcttccgtcaagtgattgatctactt
gcttcagagaagaagttgattgttggccacaattgtttcctcgatattgcacatgtatac
agcaaatttgttggtcctcttccttcaacagctgagaaattcgtcgcctccatcaacagt
cactttccttacattgttgacaccaaaatactcttaaatgtgaacccaatgttgcatcag
cggatgaagaagtccagtacatcactatcctccgcgttttcttcgttatgtccgcaaatc
gagttttcttcaagatcctcggactcgcatcttcagcagcgtctcaagattgatgttgaa
gtagacaacatcaggtgttctaactggaatgcaggaggaaaacatgaagccggttatgat
gctttcatgacaggttgcatctttgcgcaggcatgcaatcatctagggttcgacttcaca
cagcattcgcaatcagataacttggcccataatgagaaacttgagaagtacatcaaccgt
ctttatctcagctggactagaggtgatatcatcgaccttcgaacaggccacactaatgca
gataactggcgagtctcaaagtttaagtacgagaatattgtcctcatctggaacttccca
cgaaaactgaaggctagagagatcaaagaatgcatctgcaaagcctttggctcggtttcc
gtcatctctgtctaccacattgatgactctgcggtttttgtcttgttcaagaattcagaa
cttgtctgtgacttcctaaagcttaagcggcagctggagtcaagcgatggtccagtttcg
gttcttcacccattatccaagatcctcgaaggtggaaacactggagctgcagactacgaa
gcatacaaagagatttgcagctctcatatctcagagatcctattctctgaccaagctgaa
acagttggtgtgaaatcgagaacaagacccgacccacaagatgagactgatagaagagaa
gagagcacagtcgctgtgactcacaaagcatcggatttgattgatgcttttttggccaat
agagttgaagtcgaaactgctacgactaattaa
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