Caldicellulosiruptor saccharolyticus: Csac_0883
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Entry
Csac_0883 CDS
T00506
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD family
KO
K03086
RNA polymerase primary sigma factor
Organism
csc
Caldicellulosiruptor saccharolyticus
Pathway
csc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
csc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Csac_0883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csc03021
]
Csac_0883
Transcription machinery [BR:
csc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Csac_0883
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ABP66499
UniProt:
A4XHW4
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All DBs
Position
996567..997802
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AA seq
411 aa
AA seq
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MTEQNLSQNNQNDMNQNGSEEVKKDQQMQHEEKEQIRQKEEPEKLSSKKNIDDKNKTEEK
KNLIREKVRELISLGQSKGFLTYSEIQEILDKVELDANQIENIYDTLENMGIDVVDDRVS
EEELLKDDLENLPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIEQGDEEAKKRLAE
ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITR
AIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIA
QEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKL
RFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFLE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaaaatctgagccaaaataaccagaacgatatgaatcaaaatggtagcgaa
gaggttaaaaaagatcagcagatgcagcatgaggaaaaagaacagattcggcaaaaagaa
gagccagaaaaactttcttctaagaaaaatattgatgataaaaataaaacagaggagaaa
aaaaatctgataagagaaaaggttcgtgaacttatttcacttgggcagagtaagggattt
ttgacatattctgaaattcaagaaatacttgacaaggtagagcttgatgcaaaccagatt
gaaaacatatatgatactcttgagaatatggggattgacgttgttgatgatagggtttca
gaagaagagcttttaaaagacgacttggaaaatctacctgaaggtattgctatagatgac
cctgtgaggatgtatctcaaggagattggcaagattccacttttgactcctgaagaggag
attgaacttgcaaagaggattgaacagggggatgaagaggctaaaaagaggcttgctgag
gcaaatttgaggcttgttgtaagcattgcaaagaggtatgtggggagaggaatgctcttt
ttggatcttatccaggaaggtaatttgggtcttttgaaggctgttgaaaagtttgactac
cgaaaaggatataaattttccacatatgcaacctggtggattcgacaggcaatcacaagg
gcaattgccgaccaggcaagaactataagaattcctgttcacatggttgagacgataaac
aagttagtgagagtatcacgtcagcttctgcaggaaaaaggaagagagccaacacctgaa
gagatagcaaaagagatgaacatgccagttgaaaaagtgcgtgagatactaaagattgct
caagagccggtgtctcttgagaccccaattggagaagaagaagatagccacttgggcgac
tttatacccgatgatgatgctcttgcgccatctgaagcagctgcatattcaatgctcaaa
gagcagcttttagaggttttggattctttgaatgaaagagaaaagaaggttttaaagcta
agatttggccttgaagatggcagggcccgcaccttagaagaggttggaaaggagttcaac
gtaacaagagagaggatccgccaaattgaggcaaaggctttgaggaaactaagacatcca
agcagaagtaagaagctaaaggattttttggagtaa
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