Cynoglossus semilaevis (tongue sole): 103386974
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Entry
103386974 CDS
T04866
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103386974 (col13a1)
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103386974 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Wzy_C
Motif
Other DBs
NCBI-GeneID:
103386974
NCBI-ProteinID:
XP_016892854
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Position
12:complement(1568579..1642532)
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AA seq
742 aa
AA seq
DB search
MEQEQGLKKLFRSQELQLQLQQQQQQQQKPSNLQPLWRNWRDLFFVTLCVAVSVLCLGVC
AVVFVRISELQSRVESLEQRSLEQQQERDARISAWSASLEQVEPVILSRLDQMLDEKLAA
RLSKTREVRDLSHSCLCPPGPPGPPGRAGFPGDKGSMGVPGRMGLKGQAGEKGAPGEPGL
SIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGPKGDLGQRGLKGQPGEPGPKGEKGVC
GDYTHRMLPITVRNMPSISPLILKRLKQGEPGAQGPPGPPGPPGPSGNPGLSGSPGKPGE
PGKPGKDPRLLPGLKGEPGVPGQKGDRGDVGLPGPLGSKGDKGDQGVEGVEGKRGFPGER
GQKGDSGFPGAPGLKGQAGVSGTPGIPGIPGKRGYRGEKGEPSSTAQGIKGEPGSPGLPG
PVGVKGDKGDQGVKGEEGPEGPAGPRGPPGPTGEPGKAEIQNENDIRNIPLMGPPGLPGP
PGPPGGPGVKGEVGLPGPPGLDGEKGPRGKSGEPGPAGPAGPQGPRGEDGVMGFPGPKGD
MGPAGSPGLDGPTGEKGATGAPGPIGLPGSMGSKGEPGETARAEMIYGPPGPPGPPGPVG
PAGSQGLLGPKGEPGIGIKGEKGASGQKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPAGV
SGPAGPKGERGEKGDGGLPGPTGPQGIPGLVGPQGLKGNRGERGKKGNRGAKGDKGDQGA
PGLDAPCPLGDDGLPVPGWWNK
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggagcagggtctgaagaagttgtttcggagtcaagagctgcagctgcagctg
cagcagcagcagcagcagcagcagaaaccttccaacctacagcctctctggaggaactgg
agggatttgttcttcgtaacgctgtgcgtcgcggtgtcggtgctgtgccttggagtttgc
gccgtagtttttgtgcgcatatcggaactgcagtcccgagtggaaagtctggagcagagg
agtctggagcagcagcaggagcgggacgcgcggatctccgcctggagcgcttctctggag
caggtggagcccgttatcctgagcagactggaccagatgttggacgagaagcttgcagct
cgattatcgaagacacgggaggtgagggacctttctcacagctgcctctgtcctccaggg
cctccaggtcctcctggacgagccggctttccgggagacaaaggcagtatgggagttcct
ggcagaatgggcttgaaaggacaagcaggggagaagggagcgccaggagaaccaggtctg
tccatcatcgggccaagaggacctcctggacaacctggaacaagagggtttccaggcttt
ccaggtccgattggcttggacgggaaacctggacaaaacggaccgaagggagacttgggt
cagcgcggtcttaaaggacagccaggtgaacctggacctaaaggagagaagggcgtatgt
ggtgattacacccatcggatgttgcccatcaccgtgcgaaacatgccctcaataagccct
ctaatcctaaaacgcctcaagcagggcgagcctggagcgcaaggaccccctgggcctcca
ggtcctccaggaccgtcaggaaacccaggattaagtggatcaccgggtaaaccaggtgaa
ccagggaaacctggaaaagatcccaggcttttacccggactgaagggtgagcctggagtt
ccaggacagaagggtgaccgaggagacgttggcctgccaggtcccctggggtcaaaggga
gacaaaggagaccagggcgttgagggagttgaaggaaagagaggcttccctggagagaga
ggccagaagggtgactcaggtttcccaggagctcctgggttaaagggtcaggcaggtgtc
tctggtacccctggtatccctggaattcctgggaagaggggctacaggggtgagaagggc
gagcccagcagtacagcccaaggcatcaagggagaaccaggatcaccaggacttcctgga
ccagtaggagtcaagggtgataagggcgaccagggagtgaagggggaggaaggacctgaa
ggcccagctggtcccagaggtccaccaggtccaactggagaaccaggaaaagctgaaatc
cagaatgaaaatgatattcgcaacatccccctaatgggccctcctggattacctggacct
ccaggacctcctggaggacctggagttaagggtgaagttggtctaccaggtccaccagga
ctggacggcgagaagggacccagagggaagtctggagagcctggtcctgcaggtcctgct
ggtcctcaaggtcccagaggggaagacggcgtcatgggatttccaggacccaagggagac
atgggtccagctggatcacctggtttagatggccctactggtgaaaagggggccacaggg
gcccctggtcccattggattacctggctcaatgggttctaaaggggaacctggagaaaca
gccagggcagaaatgatctatggtcctccaggacctccaggacctccaggacctgttgga
ccagcaggatcacaaggacttttaggacctaagggagaaccgggtattgggataaaagga
gaaaagggagcgtcggggcaaaagggcgacaaaggagaccgaggtcatctaggacttcct
ggggctcatgggttagacggcagaccgggtccagtgggtttaataggaccagcaggtgtt
tctggaccagcaggaccaaagggagagagaggtgaaaagggagacggaggattaccagga
ccaactgggcctcaaggaatccctggattagtaggaccacaaggacttaaaggaaaccgg
ggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaaggagca
cccggattagatgccccctgtccgttgggagatgatggcttgcctgtaccaggatggtgg
aataaatga
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