Chryseobacterium shandongense: EG350_14785
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Entry
EG350_14785 CDS
T05920
Name
(GenBank) HD domain-containing protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
csha
Chryseobacterium shandongense
Pathway
csha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG350_14785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csha03019
]
EG350_14785
Enzymes [BR:
csha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
EG350_14785
Messenger RNA biogenesis [BR:
csha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EG350_14785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
HD
tRNA_NucTran2_2
MIOX
Motif
Other DBs
NCBI-ProteinID:
AZA58376
UniProt:
A0A3G6MYS8
LinkDB
All DBs
Position
complement(3307917..3309338)
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AA seq
473 aa
AA seq
DB search
MFINLNQNKNLKLFKIISEVAEKNGQSVYIVGGYVRDLLMKRKASTDIDFVTEQSGIELA
RNVGKEIDPKMKVSVFKTYGTAMIKYKDLELEFVGARKESYTEDSRKPEVEGGTIEDDQK
RRDFTINAMAISLNQDNFGELIDPFNGIDDLEKGILRTPLEPAQTYSDDPLRMMRAIRFA
STLQFRIEEKSLEAIKQEAERIKIVSMERIMVEFNKIMLSQKPSVGLRLMEETGLMKLII
PELIDLKGIEEIEGQTHKDNFYHTLEVVDNISENTDNLWLRWAALLHDIGKAPTKKFVEG
TGWTFHGHEFLGSKMVKTLFQRLKLPLGPDMKYVQKMVKLSSRPIALITDDASDSALRRL
LFDAGEDMEDLFTLCKADITTKNSKKQEKFKKNFEYVAVKIKEVEEKDQVRNFQPPISGE
EIMAMFNLKPGREIGILKEKVKEAILEGEIGNDSEEAKQFVIAEGEKLGLTLA
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgttcatcaacctaaatcaaaataaaaaccttaaactttttaaaataatttctgaagtc
gcagaaaaaaacggacagtcggtatacattgtaggcggctatgttcgcgatttgctgatg
aaaagaaaagcttctactgatattgattttgtgactgaacagagcggcatcgagctagcc
cggaatgtaggaaaggaaatagaccctaaaatgaaggtttctgttttcaaaacgtacgga
acagccatgataaaatataaagaccttgagcttgaatttgtaggtgccagaaaagaaagt
tatacggaagacagccggaagccggaagtggaaggcggtaccatagaagacgatcagaag
agacgggactttaccatcaatgcaatggctatttctttaaatcaggataattttggtgaa
ttaatcgatcctttcaacgggattgacgacctggaaaaaggaattttgcgaacgccttta
gaaccggctcaaacctattcggatgatccgttgcgtatgatgagagccattcgttttgct
tctactttacaattcaggatcgaagaaaaatccctggaagcaatcaaacaggaagcggaa
cgtatcaaaatcgtttccatggaaagaattatggtagaattcaacaaaatcatgctttcc
caaaaaccttctgtcggtctcagacttatggaagaaacaggcttaatgaaactgattatt
cccgaactaatcgacctgaaaggaatagaagaaatagaagggcagacccacaaggacaac
ttttaccataccttagaagtcgtagacaatatttcagagaatactgacaatctttggctg
cgttgggccgcattgcttcacgatatcggaaaagcgccaaccaaaaaatttgtggaagga
acaggatggacctttcacgggcacgagtttttagggtcaaaaatggtgaaaacattattc
cagagattgaagctgcctttaggcccggacatgaaatatgttcagaaaatggtgaagctt
tcttcccgtcctattgcattgattacagacgatgcttcggattccgcattacgaagattg
ctgttcgatgcaggagaagatatggaagatcttttcaccctttgtaaggcagatattacc
actaaaaactccaaaaagcaggagaaattcaagaagaattttgaatatgtggcagtaaaa
atcaaagaagtggaagaaaaagatcaggtaagaaactttcagccgcccatttcaggagaa
gaaattatggcaatgtttaatttaaaaccaggccgcgagatcggaattttaaaagaaaaa
gtgaaagaagcgatcctggaaggtgaaattggaaatgatagtgaagaagcaaaacaattc
gttattgcagaaggagaaaaactgggcttaacacttgcttaa
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