Coccomyxa subellipsoidea: COCSUDRAFT_68114
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Entry
COCSUDRAFT_68114 CDS
T02914
Name
(RefSeq) RNA-binding domain-containing protein
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03015
mRNA surveillance pathway
csl03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCSUDRAFT_68114
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
COCSUDRAFT_68114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_68114
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
COCSUDRAFT_68114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
17036928
NCBI-ProteinID:
XP_005643522
JGI:
68114
UniProt:
I0YKQ9
LinkDB
All DBs
AA seq
339 aa
AA seq
DB search
MQTSEAAAPDFDDDEDFRLSAPTAKLEDTRPPLDDDAASIDLYGDVADGNNDDFASLYGS
GPAPNQQTQEELEEQIMPADRPGPSENGTEQYQSDAGARVQQSTAGEGPVVKRGSAASSS
RGEPSYGTIDAVYVGNLQWWTTDAQIEELCSQFGSVQKFRFFEDKANGKSKGYVLVTFDS
PKAAYTCKEGLDGTMVDGKKCVVTFAKQKEPGKGQGAQRDGTAMASTSQGPTGRGAAYRG
RSQEQGGRGPRMRPPVGDPPFSGSMGGGGGPGMGWNGGPGMGPGPFMPPGIMGPGMGPMG
PGMPFMPPGFPPGMQHNMHMGRGTPYARGPMNNFKRPRY
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgtcagaagctgctgctccggatttcgacgatgatgaagactttcgcttgagt
gctccaactgcaaaactggaggacacgagaccaccgctagacgacgatgctgcttcgatt
gatttgtatggcgacgttgcagatgggaacaatgacgattttgcatccctgtatggaagc
ggacccgcaccaaaccagcagactcaggaggagttggaagagcagatcatgccagctgac
agacctggtccctcagagaatgggacagagcaataccaatcggatgcaggtgccagagta
cagcaaagcactgctggcgaagggcctgttgtgaagcgcggatctgctgcatcaagctcg
agaggggagccttcttatgggaccatagatgctgtgtatgtcggcaatctgcagtggtgg
acaacagatgcacagatcgaggaactctgctcccaatttggctctgtgcagaaattccgg
ttctttgaggacaaggccaatggaaagtccaagggttatgtccttgtgacctttgacagc
ccaaaagcagcatacacctgcaaggaaggattggacgggaccatggtggacggaaagaag
tgcgttgtgacctttgcaaaacagaaggagccagggaaggggcagggtgctcagagagat
ggcactgcgatggcgtccaccagccaaggccccacaggcaggggggcggcgtaccgtggg
agatcccaggaacagggcggcagagggccgcgcatgcgacctccggtgggggaccccccg
ttctctgggagcatgggcggcggcggggggcccggtatggggtggaatggggggcctgga
atgggacctgggcccttcatgcctccagggattatgggacccggtatggggccaatgggg
cctggaatgcccttcatgccgccaggattcccgcctggcatgcagcacaatatgcacatg
ggaagaggaacgccatatgcccgaggaccgatgaataacttcaagcggccaagatattga
DBGET
integrated database retrieval system
