Cytobacillus solani: LIS82_17130
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Entry
LIS82_17130 CDS
T08360
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csoa
Cytobacillus solani
Pathway
csoa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LIS82_17130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csoa03400
]
LIS82_17130
Enzymes [BR:
csoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LIS82_17130
DNA repair and recombination proteins [BR:
csoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LIS82_17130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
USK53321
LinkDB
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Position
3273593..3275419
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AA seq
608 aa
AA seq
DB search
MKPMLPSLSFEIPEGKEWLYEVKYDGFRAILHWDDNEITLTSRNGKSLLELFPEVRLFLE
TNKDKFAPYLPLTLDGELVFLENAYKAHFGSIQVRGRMRSKKRIADKANASPCKLLIFDV
IELSGKSVVNELYLSRKAILLALFKQCDLPLKPDEKSVKLIQMLPYYKNFAEVWEKVTLY
DGEGIVAKQQNNRWEDGKRTSLWVKYKNWKYATCFITSYEKSNGYFYVGVYRNQTIIPIG
QFIFGIKPDEKKALAQIIKENKADEDNQYIYVEPAICVEIKYLEIYEEQMREPHFHQFKF
EIKPDSCTYDQFIQGQKNLPPDVIITHPNKPLWEEPPLQKIDFIHYLREISPYMLPFLKD
RLLTVIRYPHGIFGESFYQKSCPEYAPDFVETKMADGINYIVCNNLKTLLWLGNQLAFEY
HIPFQTINNHRPCEIVFDLDPPSREAFGLAVKAAKYIKEILDQLELIGFVKTSGNKGLQI
YLPLQENTYTFEETRLFTAFIADYLVSKEPDSFTIERMKKNRGNRLYVDYIQHAEGKTII
APYSSRGTKEATVATPLHWEEVNEHLRIADFQIPAILKRINQYGDPFHQYFAAKEKQNLQ
PVLDFLKK
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
ttgaagccgatgctgcctagtctttcttttgagattcctgaaggaaaagagtggctttat
gaagttaagtacgatgggtttcgggcgattttacattgggacgataatgaaataacgctt
acgagcagaaacggcaaatcattattggaattatttccagaagtacgattattccttgaa
acgaacaaggacaaatttgccccttatctgcctcttactttagatggagaattggtcttt
ctcgaaaatgcctataaggcacattttggctccattcaagttaggggaagaatgcggtca
aaaaaaaggattgcggataaagcaaatgcttccccttgcaaacttctcatatttgatgta
atcgaattaagcggaaaatcagtagtaaatgaactgtatctttcgaggaaagcaatattg
ctggcattatttaaacaatgtgatctcccccttaaacccgatgaaaaaagtgttaaactc
attcaaatgcttccatattataaaaatttcgccgaggtttgggaaaaggttactctttat
gatggagaaggaattgtagccaaacagcaaaataatagatgggaagatggaaaaagaacc
tctttatgggttaaatataaaaattggaaatatgccacttgttttatcacctcatatgaa
aaatccaatggttatttttatgttggtgtatacaggaatcagacaattattcctattggg
caatttatctttggtataaagcccgatgagaagaaagcacttgcccaaatcattaaagaa
aataaagcagatgaggacaatcaatatatttatgtagagccggccatttgtgtagaaatc
aaatatttggaaatctatgaggaacagatgcgtgaaccacatttccatcaatttaaattt
gaaataaaaccggattcgtgtacgtatgatcaattcattcagggacagaagaatctgccg
ccagatgtgatcattacccatccaaataaaccattatgggaagagcctcctttacaaaag
attgatttcatccattatttaagagagatttccccatatatgcttccttttctaaaagat
cgattattaacagttatccgctacccacatggaattttcggagagtctttttaccaaaag
agctgcccagaatatgcgccagatttcgttgaaactaaaatggctgatgggattaattac
atcgtttgtaataatcttaaaaccttactgtggcttgggaatcagcttgcatttgaatat
catattccttttcaaacgataaataatcatagaccatgtgaaattgtttttgaccttgat
cctccatcaagagaggcatttggacttgccgttaaagccgcaaaatatattaaggaaatt
ctcgatcagcttgaactaattggctttgtaaaaacatccgggaataaaggattgcaaatt
taccttcctctccaggaaaatacgtatacgtttgaagagactagactattcacagccttt
attgccgattacttagtctcaaaagaaccagattcctttacaattgaacggatgaaaaaa
aatcgtggcaatcgcctctacgtcgactatattcaacatgcagaagggaaaacgattatt
gctccttattcatcaagaggaactaaagaagccacagttgctactccccttcactgggaa
gaagtaaatgaacatttacggatcgctgactttcaaattcctgccattctaaaaagaatt
aatcagtatggtgacccttttcatcaatattttgcagcgaaagaaaaacaaaatcttcag
cctgtccttgatttcttaaaaaaatag
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