Cytobacillus solani: LIS82_23845
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Entry
LIS82_23845 CDS
T08360
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
csoa
Cytobacillus solani
Pathway
csoa02020
Two-component system
csoa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
csoa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LIS82_23845 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LIS82_23845 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csoa03021
]
LIS82_23845 (rpoN)
Transcription machinery [BR:
csoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LIS82_23845 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_5
HTH_20
Sigma70_r4
HTH_11
HTH_Tnp_ISL3
HTH_6
HTH_23
Sigma70_r4_2
MarR_2
HTH_IclR
HTH_Crp_2
GerE
LexA_DNA_bind
MarR
HTH_AraC
HTH_21
HTH_38
Fe_dep_repress
HTH_24
Motif
Other DBs
NCBI-ProteinID:
USK54544
LinkDB
All DBs
Position
complement(4576888..4578219)
Genome browser
AA seq
443 aa
AA seq
DB search
MNLQAGLWQQQTLKLTMTQELTQAIALLQYNTQELSAFLENKALENPLLQIEPGNVQAMD
PRKDRVKPTRKKVDKDKQNWIEQIGETVTYLDEYLKSQVDLNRLTINGKKVFDYLIECID
ENGYFRAEVSEVAAHFKLSDEEVYEHLKLLQGLEPAGIGARNLQECLLLQLRRCEKRNVL
AEEIIEKHFLPFAEKKWKDISKLLNVKLNEIQEVFDFIQTLNPRPASSFQHEKSAYIVPD
VVIKWDGESFTVSIFDEALPKISFNSAYYEKFSSNNDKSVNRFIQENQQDYQWIMKSIEQ
RKETLTKVSLKIVEKQRDFFMNGPAYLRPMTMKEIADELEIHESTVSRAVREKYAQTPFG
TYELRSFFSSTIKTTSDENTSSKQVKTIISQLVEGENKQKPLSDQEIVHLLKEQEGMVVS
RRTIAKYRDQLGIPSSSKRKRYE
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaacttacaagcagggttatggcagcagcagactttaaagctaacgatgacgcaagag
cttactcaggcgattgccttgctgcaatataatacacaggagctttctgcatttttagag
aataaagctttggaaaaccccttattgcagattgagcctggcaatgtgcaagccatggac
ccccggaaggatcgagtgaagccaactcgcaagaaagtggataaagataagcaaaactgg
attgaacagattggggaaacggtgacttatctagatgaatatttaaagtcacaggtagat
ctcaatcgattaactataaatggaaaaaaagtatttgactatttaattgagtgtatcgat
gaaaacggttactttcgtgcagaggtaagtgaagtagccgctcattttaaactatcggac
gaagaagtctatgaacatcttaaactattgcaaggattagagcccgctgggatcggtgcc
cggaatttgcaagaatgcctcttattgcaattacggcgctgtgagaagaggaatgtactc
gcagaagaaatcatagaaaagcatttccttccttttgctgaaaagaaatggaaggatata
tcaaaattgctcaatgtaaaattgaatgagattcaagaggtattcgatttcattcaaaca
ttaaatccaagaccagcttcctcctttcaacacgaaaaatctgcttacatagtgccagat
gttgtgattaagtgggatggggaatcctttacagtaagtatatttgatgaggcattgccg
aaaattagctttaacagcgcgtactatgaaaagttctcgtctaacaatgataagtcagtc
aatcgctttattcaggaaaatcagcaggattatcaatggatcatgaagagcattgagcaa
agaaaagaaacattaacaaaggtttctttgaagatagtagaaaaacagcgggactttttt
atgaatggacctgcatacttacgaccaatgacaatgaaggagattgcggacgaacttgaa
attcatgagtcaacggtcagtcgtgccgttagagagaagtatgcgcaaaccccttttgga
acgtacgaattaagatccttcttctcaagcacgataaagactacatcagatgagaatacc
tcatccaagcaagtaaagacgatcattagccaattggtagaaggcgaaaacaaacaaaag
ccattatctgatcaggaaatcgttcatttgttaaaagagcaagaggggatggttgtttcg
cgtagaacaattgcgaaataccgggatcagctcggtattccttcttcatcaaaacgaaaa
cgctatgaatga
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