Cytobacillus spongiae: LS684_12080
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Entry
LS684_12080 CDS
T09119
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cspg
Cytobacillus spongiae
Pathway
cspg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LS684_12080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cspg03400
]
LS684_12080
Enzymes [BR:
cspg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LS684_12080
DNA repair and recombination proteins [BR:
cspg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LS684_12080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UII54418
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Position
2392207..2394048
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AA seq
613 aa
AA seq
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MKPMLPTLSFEVPKGKEWYYEVKYDGFRAILSINDGISLVSRNGHSLIHQFPELADFLAA
HKDLIEPFTPLELDGELVILENEFKANFSAIQTRGRMRALNRIKEMAMQTPCRLLVFDLL
MIKGQSLKKMPYEERKQKLAELFETVLFPLTPTINSPSLIQLVPAFTSIHDVWEQVVLFD
GEGIISKHANNKWEEGKRTPLWIKLKNWKFVTCFITAYEKSNGYFHVAVQHEKEIIPIGQ
FLFGLKPEEKDALYQTIMKNTKKEDRKLIFVEPSICVELKYLEMYDEQMREPHFHRFLFD
TLPNDCTYEKFAFQQLNIPPGIEITHPEKPLWEEPAIQKKDYIHYLRGISPYILPFLMNR
TLTVIRYPHGMLSHEAFYQKNCPDYAPDFVQTYNLEGINYIVCNDVKTLIWLGNQLAFEF
HIPFQTIQSIGPSEIVFDLDPPSKNEFSLAIRAALKIKEVLDHFHLKSFVKTSGNKGLQI
YIPLPENKYSYDETRKITAFIAEYLVTNDPNSFTIERLKKNRGNRLYVDYIQHGEGKTIV
APYSPRGNRQATVSTPLFWNEVKEGLSMEEFQIPTLLHRLREKGCPFRNYFPSKKTQCLT
PILQFISNGMNRN
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgttacctacgttatcgtttgaagttccaaaaggaaaggaatggtactac
gaggttaaatatgacggatttcgagccattttaagtataaacgatggcatttcattagtt
agtagaaatggtcattcacttattcatcaatttccagaattagctgattttctagcagcc
cataaagatttgattgaaccttttacacctttggaattggatggagaactcgtcatcctt
gaaaatgaatttaaggcaaatttctctgctatacaaacacgggggagaatgagggcattg
aatcgaatcaaagaaatggctatgcagaccccttgtcgcttattggtttttgatctactt
atgataaaaggacaatcacttaaaaaaatgccttatgaagaaagaaaacaaaaattagct
gagctatttgagaccgttctcttccccttaaccccaaccattaatagtccttccttaatt
cagttagtacctgcattcacatccattcatgacgtatgggaacaggttgtgttatttgac
ggggaaggaattatctctaagcacgcgaacaataaatgggaggaaggaaaaagaactcca
ctttggataaagcttaagaactggaagtttgtgacctgttttattactgcttacgaaaaa
tcaaatggctattttcatgtagcagttcagcatgaaaaagaaatcattcctatcggtcaa
ttcttatttggattgaaaccagaggagaaagatgctctttaccaaacgatcatgaagaat
acaaagaaggaagaccgaaagctcatatttgtagagccgagtatttgtgtcgagttaaaa
tacttagaaatgtatgatgaacaaatgagagagccccatttccataggtttctctttgat
actctaccaaatgactgcacttatgaaaaatttgctttccaacaactaaatattcctcct
ggcatcgaaataacacaccctgaaaaaccgctttgggaagagcctgctatccaaaaaaaa
gactacattcattacttaagaggaatctcaccgtacattcttccttttctaatgaatcgt
acattgactgttattcgatacccacacggtatgttaagccatgaggcattctatcaaaaa
aattgtcccgattatgctcctgacttcgtccaaacctataacttggagggaatcaattac
attgtatgtaatgatgtaaaaacactcatatggcttggaaatcagcttgcatttgaattt
catattccattccaaacaatccaaagcattggaccaagtgaaatcgtctttgatctagat
cctccatcaaaaaatgagttctcccttgctattcgagcagcacttaagatcaaagaagta
ctcgatcattttcatctaaagagttttgttaaaacttctggaaataaaggattgcaaatt
tacattccattacctgaaaacaaatattcgtatgatgaaacgaggaaaatcacagccttc
atcgctgaatatctagtgaccaacgatccaaattcatttacgattgagcgactaaaaaag
aatcgaggaaatcgtctatatgtggattatatacagcatggagaaggaaaaacaattgta
gcaccatattcccctagaggtaatagacaagcaactgtttctacgcccctattttggaat
gaggtaaaggaggggctgagcatggaagaatttcaaattccgaccctccttcacagacta
agagaaaaaggctgtccatttcgtaattatttcccatctaagaaaacgcaatgcttaacc
cctattttacaattcatatcaaacggaatgaataggaattaa
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