KEGG   Chryseobacterium suipulveris: MTP09_06675
Entry
MTP09_06675       CDS       T08539                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
csup  Chryseobacterium suipulveris
Pathway
csup03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csup00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MTP09_06675 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csup03400]
    MTP09_06675 (ligD)
Enzymes [BR:csup01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MTP09_06675 (ligD)
DNA repair and recombination proteins [BR:csup03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MTP09_06675 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2 mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: UOE42314
LinkDB
Position
complement(1399366..1401906)
AA seq 846 aa
MSLKEYNKKRDFKQTSEPAGIPENSGEKLRFVVQRHAASHLHYDFRLEMDGVLKSWAIPK
GPSLNPKDKRLAMMVEDHPFSYRTFEGTIPKGNYGAGEVEIWDEGWYEPLNKIKGKTDDL
VMRAELHKESLKFVMHGKKLQGEFALVKIKNSDDGKSWLLIKHKDDFATDFYNAEENTSE
NSKVTAALKKKSEKDVSENTARSYKNYAPALSKEKKLKKFIEPMLAKPSDNKPFDSKDWA
FEIKWDGYRAIADLRDGIQLYSRNGLDFSAKFKKIVNQLGLQQHEMVLDGELVAYDNMGK
PNFQWLQNIGEKPNTPIIFQVFDLLFLNGHSTRSLTYLERKELLKDALKETENIKFCDHI
LEKGKEFFRLAEQMGLEGIIAKKTESTYSDGIRSSEWLKIKTQQTDEVIICGFTEPKGSR
KHFGSLILGNYIDGELTFSGHIGTGFSDKTLKELYGVMHPLIVEKSPFKTLPKTNGKATW
LKPELIAEIKYSEKTKDGIFRHPVFLHLREDKEVSDLKEDQQTPEQPMEKKSTKPVKTAV
TTRENEAKTKIGKQEVKLTNQNKIYFPKDNVSKGDVVAYYQSVAEFILPHLKNRAQSLNR
FPNGIDGMSFYQKDAADETPDWIETHKIYSDSNDKYINYIICNDAATLAYLNNLGCIEMN
VWTSRIDNIENPDYLALDLDPSDNNTFEDVIATAKEVKKVLDKAKIEGYPKTSGSSGIHI
YIPMGSQYSFEQVKNFGHLLMQQVQKALPEITTLERSLQKRDKGKIYLDYLQNRRGQTLA
SAYSLRPKNGAPISMPLEWSEVKSGLKPTDWNIENALSRIEKKGDLFLPTLKKGIDMLKA
LDNLQA
NT seq 2541 nt   +upstreamnt  +downstreamnt
atgtctctaaaagaatacaacaaaaagcgcgacttcaaacaaacctccgaacctgcagga
attcctgaaaactcgggcgagaaacttcgttttgtggttcagagacacgctgcatcgcat
ctgcattacgattttcgtctggaaatggacggcgtgctaaaaagttgggcgattccgaaa
ggtccttcgcttaatccgaaggacaaacgtttggcgatgatggttgaagaccaccctttt
tcctaccgcacttttgaaggcacgattccgaaaggaaattacggagcaggcgaagttgaa
atttgggacgaaggctggtatgaacctttgaataaaataaagggaaaaacagatgatttg
gtaatgcgcgctgaactgcacaaagaaagtttgaaattcgtaatgcacggcaaaaaactt
cagggtgaatttgctttggtgaaaattaaaaattctgatgatgggaagtcgtggctgctc
atcaaacacaaagatgattttgccaccgatttttacaatgccgaagaaaacacttccgaa
aattcaaaagttacagcagctttaaaaaaaaaatctgaaaaggacgtctccgaaaataca
gcaagatcctacaaaaactacgcacctgccctttccaaagaaaagaaactgaaaaaattt
atcgagccgatgctggcgaaaccttcagacaataaacctttcgacagcaaagactgggcg
tttgaaataaaatgggatggttatcgcgcaattgcagatttgcgcgacggcattcaactc
tactcgagaaacggattggacttttcagcaaaatttaagaaaatcgtcaatcaactcggt
ttgcagcagcacgaaatggttttggatggcgaattggttgcctatgacaacatgggaaaa
ccgaattttcaatggctgcaaaatattggtgaaaaaccaaataccccaataatttttcag
gtttttgatttattgtttttgaatggtcattcaacccgaagtttaacgtatctcgaacgg
aaggaactgctgaaagatgctttaaaagaaaccgaaaacatcaaattctgtgatcatatt
ttggaaaaaggaaaagaatttttccgacttgctgaacagatgggactcgagggaattatc
gccaaaaaaaccgaaagcacttacagcgacggcatccgttcatctgaatggttaaaaata
aaaacacagcaaaccgacgaagtcatcatctgcggatttaccgaacctaaaggatcaaga
aaacactttggctccttaattttagggaattatattgatggtgaactgacattttcagga
cacatcggaacaggattttcagacaaaactttaaaggaactttacggtgtaatgcatcct
ttaattgtagaaaaatcacctttcaaaacgttgccgaaaaccaacggaaaagctacttgg
ttaaaacccgaactgattgcagaaataaaatattccgaaaaaaccaaagacggaattttc
aggcatcccgttttccttcatttaagggaagacaaggaagtttccgatttaaaggaagac
cagcaaacacccgaacaaccaatggaaaaaaagtcaaccaaacctgtgaaaaccgccgta
accacacgagaaaacgaggccaaaaccaaaattggaaaacaggaagtgaaactcacgaat
cagaataaaatttatttcccaaaagacaatgtttccaaaggtgatgttgtggcgtattat
cagagcgttgccgaatttattctaccgcatctcaaaaaccgcgcacagtctttaaaccgc
tttccgaacgggattgacggaatgagtttctaccaaaaagatgctgccgacgaaactccc
gactggattgaaacccacaaaatctactccgacagcaacgataaatacatcaattacatc
atctgcaacgatgcggcgacacttgcctacctgaacaatctcggctgtatcgaaatgaac
gtgtggacaagcagaatcgacaatattgaaaatcccgattatttagctcttgatctagac
ccttccgataacaatacttttgaagacgttatcgccaccgccaaagaagtaaaaaaagtg
cttgacaaagccaaaattgagggctatcccaaaacttccggcagttcaggaatccacatt
tatattccgatgggaagccagtattcttttgaacaggttaaaaatttcggtcatctcctg
atgcagcaagttcagaaagcacttcccgaaattaccactttggaacgcagtcttcagaag
cgtgataaaggcaaaatttatctagattatctacaaaaccgccgcggacaaaccttggcg
agcgcctacagtttaagaccgaaaaacggtgcaccaatttcaatgccattggaatggagc
gaagtgaaatcaggcctaaaaccaaccgattggaatatcgaaaatgcactttcaagaatc
gagaaaaaaggcgatttgtttttgccaactctgaaaaaaggaatcgacatgctgaaagcg
ctcgacaaccttcaagcataa

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