Chryseobacterium taihuense: NCTC12078_02832
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Entry
NCTC12078_02832 CDS
T07055
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC12078_02832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctai03400
]
NCTC12078_02832
Enzymes [BR:
ctai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC12078_02832
DNA repair and recombination proteins [BR:
ctai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC12078_02832
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
VFB04793
UniProt:
A0A4U8WEZ3
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All DBs
Position
1:complement(2980218..2982080)
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AA seq
620 aa
AA seq
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MLAKLSDDAFDHPDWIFEIKWDGYRAVADLSKEEPLFYSRNGISFLSKFKKISEDFNAQR
HRMILDGEIVAYDENGKPSFQLLQQIGDNPNLALTYQVFDLLWLNGHSTEELALLQRKEL
LKDALVETDLIKYCDHVPENGIDFFNQMKKMNLEGMIAKRADSIYTENSRSTDWLKIKFT
NTEEAVICGFTEPKGSRTGFGALILGKYINGELIYAGHTGTGFNTELLKEIHSKLTKIEQ
KESPFETIPKTNMPVTWVKPELICEVKFSEITKDGMFRHPVFVAIREDKTIEDLQTTTPQ
KSEKMVKKQTIKKSDSETDKEVTLNRHKVKLTNQDKIYFPKDGITKGDVVEYYQSVARYI
LPHLKNRPLSLNRFPNGIEESGFYQKDAGDSFPDWIETTKVHSDSTDKYIDYVICNDKAT
LAYLNNLGCIDLNPWNASVPDLENPDFLVLDLDPSKKNSFDNVIETALQVNEVLKSIKVK
GYCKTSGSTGIHVYIPMKKQYDFDQVKDFAHILMKKVHDQLPELTTLERSLKKRDDKKIY
LDYLQNRSGQTLASVYSIRPKEGASVSMPLEWDELKPGLKPTDYTIHNALKRIEKKGDLF
KPVLGKGIDMMKALELLEDM
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccaaactttcagacgatgcctttgatcaccccgactggatttttgaaataaaa
tgggacggctacagagcggttgcagatctcagcaaggaagaacctttattttattccaga
aacggaatttcttttttaagtaaattcaaaaaaattagtgaagattttaatgctcagaga
caccgcatgatccttgatggtgaaattgttgcctatgatgaaaacgggaaaccaagtttt
caattgcttcagcagattggcgacaacccaaatttagcacttacttatcaagtttttgat
ttgctttggctgaacggacattctaccgaagaacttgctttacttcagcgaaaagaactt
ttgaaagatgcattagtagaaacagatctgattaaatattgtgaccatgttccggaaaac
ggaattgatttctttaatcagatgaaaaaaatgaatctggaaggaatgatcgctaagaga
gcagacagcatttatactgaaaacagcagaagcacagactggctgaaaataaaatttacc
aataccgaagaagcagttatttgcggttttacagaacctaaaggatccagaaccggtttt
ggcgctttaattttaggcaaatatattaatggagaattgatttatgccggacataccgga
accggattcaatactgaattgctgaaggaaattcattctaaattaacaaaaatagaacag
aaggaatctccttttgaaaccattccgaaaacaaatatgcccgttacatgggtaaaacca
gagcttatctgtgaagtaaaattttctgaaatcaccaaagacgggatgtttcgccatcct
gtttttgtcgccataagagaagataaaactattgaagacctccaaaccaccacaccacaa
aaatctgaaaaaatggtaaaaaaacaaaccataaagaaatctgattccgaaactgataaa
gaagttactcttaaccgacacaaagtaaaactcaccaatcaggataagatatactttcca
aaagatggcattacaaaaggtgatgtggttgagtattatcagtctgtcgcaagatatatt
ttaccccacctgaaaaaccgtccgctttctctcaatcgttttccaaacggaattgaagaa
tccggattttatcagaaagatgccggagattcctttccggactggattgaaaccaccaaa
gtacactcggattctaccgataaatatattgattatgtcatctgcaatgataaagcaacc
ttggcgtatctcaataatttgggctgtattgatcttaatccttggaatgcttctgttccc
gatttagaaaatcctgattttctggttttggatctggatccgtcaaagaaaaacagtttt
gacaacgttatcgaaacagcattgcaggtgaatgaagttttaaaatcaattaaagtcaaa
ggttattgcaaaacttccggaagtacagggattcatgtttatataccaatgaaaaaacaa
tacgattttgatcaggtaaaagattttgcacatattttaatgaaaaaagtacatgaccag
cttccagagcttaccactttagaacgaagtttaaagaaacgagacgataaaaaaatctat
cttgattatcttcaaaacagatccggacagactttggcaagcgtttacagcattcgtccg
aaagaaggcgcatccgtttccatgcctttggaatgggacgaactgaagcctggattaaaa
cctactgattatactattcataatgcgttgaaaagaattgaaaaaaaaggagatttgttt
aagcctgttttgggaaaaggaattgatatgatgaaggcgttggagttgttggaggatatg
taa
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