Clostridium thermosuccinogenes: CDO33_02835
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Entry
CDO33_02835 CDS
T05300
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cthd
Clostridium thermosuccinogenes
Pathway
cthd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDO33_02835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthd03019
]
CDO33_02835
03400 DNA repair and recombination proteins [BR:
cthd03400
]
CDO33_02835
Enzymes [BR:
cthd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDO33_02835
Messenger RNA biogenesis [BR:
cthd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDO33_02835
DNA repair and recombination proteins [BR:
cthd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CDO33_02835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AUS95473
UniProt:
A0A2K2F6X4
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All DBs
Position
633538..635316
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AA seq
592 aa
AA seq
DB search
MQFPILALTATAVWGGEFDTLNEIIGYLNLMPDPIIYYTDIKRTNVDIEIKKVNVTGNYR
ETKIKMTIDEITKIVKEGKKAIVYFPWKSQIKDIYIRLSEDIQSKVAIYTGDTKGEEGEE
IISKFKSGEYIVVLATKAFGMGIDISDIEIVYHHAIPGNLADYSQEIGRAGRNREIRGKA
YTLFNQKDFQYWRILKGISRPTQWELKLIVNKLYDEFKYGKKKRLQKLLPLDTFSFVFNE
NEVDNTEQKIRTALFLIEKDFFKRFGWNIISVYPRDEFGNYYCTVDDGNKDEFINKYGKY
VREICNIEDNIRFSRDKYYLCKDIGNILEIDLKKLWEEKYYDKNYRSIKYLFFNNKLFED
FSVIPRIYTKIELQSSKEKVLGQLEYALNIIATALQTQDKFTKNELEKSLRRVVRDDYGL
DDKEIINKLLHICTTFLYMEVGSNNYSHKMIIRKRDEGNEYIYIAPRLKISLGLQNIIKI
FNNRFEDGEIFEKFLVPPYIGNSIYTCETLDLAYILETMGLASFIINGGHMPYVNIVVNS
VDKLATAYYKNQLLMDMRTRDDNEIKIVERFINTDKNKWDYIEDYFLGRLNI
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttccaattttagcattaacggcaactgcagtgtggggtggagaatttgataca
ctaaatgaaataataggatatttaaaccttatgccagaccctatcatctattatacagat
attaaaagaacaaatgtagatatagaaataaaaaaagtaaatgttactgggaattaccgt
gaaaccaaaataaaaatgactattgatgaaatcactaagatagtaaaggaaggaaagaaa
gcaatagtatactttccgtggaaaagccaaattaaagatatttatattagactttcagaa
gatattcaatctaaagtagcaatttatactggtgacacaaagggagaagaaggtgaagaa
attatttcaaagtttaagtctggagaatatatagttgttcttgcaacgaaagcctttggc
atgggtatagatatatctgatattgaaatagtatatcatcatgcgatacctggaaatttg
gctgattattcccaagaaattggacgagcgggcaggaatcgagaaattagaggaaaagcc
tatactctatttaatcaaaaagattttcaatattggagaattcttaaaggaatttctcgt
cctacacaatgggagttaaaacttatagttaataaattatatgatgagtttaaatatggt
aagaaaaaacgtctacaaaagttattgcctttagatactttttcatttgtttttaacgaa
aatgaagtagataataccgagcaaaaaataaggacagcattatttttaatagaaaaagat
ttttttaaaagatttggttggaatataattagcgtctacccaagagatgaatttggtaac
tattactgtacagtagatgacggtaataaagatgaatttataaataaatatggaaaatat
gttagagaaatttgcaatatagaagacaatattagattttcaagagataaatactatttg
tgcaaagatattggtaatattctcgaaattgatttaaagaagttatgggaagagaaatac
tatgataaaaactataggtctattaagtatctgttttttaacaataaactctttgaagat
ttttcggtcataccaaggatttatacaaaaatagaacttcagagttctaaagaaaaggta
ctagggcaacttgaatatgcattgaatataattgcgacagcacttcaaacgcaggataag
tttacaaagaatgaattggaaaagtctctgagaagggtagtaagagatgattatgggtta
gatgacaaggaaattatcaataaacttctacatatatgtactacttttctttacatggaa
gttggaagtaataactattctcataagatgattatacgtaaaagagatgaaggcaatgaa
tatatttatattgctccaagacttaaaatttcgttaggattacaaaacattattaagata
tttaataataggttcgaagatggggaaatatttgaaaagtttttagttccaccatatatt
ggaaactctatttatacttgcgagacattggatttagcatatatactagaaactatggga
ttagcaagttttattatcaatggtggtcatatgccatatgttaacattgttgtaaactcg
gttgataagttagccacggcatactataaaaatcaattattgatggatatgcgaacaagg
gatgacaatgaaatcaagatagtcgaaagatttatcaatacagataagaataaatgggat
tatattgaagattactttttaggaagattaaatatataa
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