Curtobacterium sp. MR_MD2014: NI26_03405
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Entry
NI26_03405 CDS
T04180
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cum
Curtobacterium sp. MR_MD2014
Pathway
cum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI26_03405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cum03019
]
NI26_03405
03009 Ribosome biogenesis [BR:
cum03009
]
NI26_03405
Enzymes [BR:
cum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NI26_03405
Messenger RNA biogenesis [BR:
cum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NI26_03405
Ribosome biogenesis [BR:
cum03009
]
Prokaryotic type
rRNA helicases
NI26_03405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
adh_short
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AIV39524
UniProt:
A0A0N6ZXF1
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All DBs
Position
710178..711998
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AA seq
606 aa
AA seq
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MSTDTATATETADEGPVVTFADLGLSDPVLKAVKDIGYETPSAIQEATIPTLLEGRDVVG
LAQTGTGKTAAFALPILSRMESGSKVPQALVLSPTRELALQVCEAFEQFASHMKHVHVLP
VYGGQAYGVQLSALRRGVDVVVGTPGRIMDHIAKGTLDLSQLKYLVLDEADEMLKMGFAE
DVETILAETPDDKQVALFSATMPAQIRRISQQYLNDPSEITVKTKTKTAANITQRYLMVS
YPQKVDALTRILEVEDFEGMIIFVRTKSETETLAEKLRARGYAAAAISGDVAQAQRERTV
NQLKSGKLDILVATDVAARGLDVDRITHVVNFDIPVDIESYVHRIGRTGRAGRKGDSISF
VTPRERRLLSAIERHTKQPLTQMQLPTVEDVNETRLSRFDDAITAALEQQDRIEKFRDVI
AHYVRNHDVPAEDVSAALAVVAQGDSPLLLDPADDQLRNQVDRDGRRGERRDRDDDRGGR
EDRGPRRSQPMTAYRIEVGRRHRVEPRQIVGALANEGGLRRDDFGAIQIRPDFSIVELPE
SMDPGVLDRLADTRISGKLIEIAPDRRGGARRYDRDDRGPRAPRRDDRPRRDDRRDDDRP
ARKPRH
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggacaccgccaccgccaccgagaccgccgacgaggggcccgtggtgaccttc
gccgacctcggcctgagcgatccggtgctcaaggccgtcaaggacatcggctacgagacc
ccctccgccatccaggaagcgacgatcccgacgctgctcgaggggcgcgacgtcgtcggc
ctcgcgcagaccggcaccggcaagaccgcggcgttcgcgctgccgatcctgtcccgcatg
gagtcgggcagcaaggtgccccaggccctcgtgctgtcgccgacccgtgagctcgcgctg
caggtgtgcgaggcgttcgagcagttcgcgtcgcacatgaagcacgtgcacgtcctgccc
gtctacggcggccaggcgtacggcgtgcagctgtccgcgctgcgccgtggcgtcgacgtc
gtcgtcggcacgcccggtcgcatcatggaccacatcgccaagggcacgctcgacctgtcc
cagctgaagtacctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgccgag
gacgtcgagacgatcctggccgagacgccggacgacaagcaggtcgcgctgttctcggcg
acgatgcccgcgcagatccgtcgcatctcgcagcagtacctgaacgacccgtccgagatc
accgtcaagaccaagacgaagaccgccgcgaacatcacgcagcgctacctgatggtgtcg
tacccgcagaaggtcgacgcgctcacccgcatcctcgaggtcgaggacttcgagggcatg
atcatcttcgtccgcacgaagagcgagaccgagaccctggccgagaagctccgcgcccgc
gggtacgccgcggcggcgatcagcggtgacgtcgcccaggcacagcgcgagcgcacggtc
aaccagctgaagtccggcaagctcgacatcctggtcgccacggacgtcgccgcccgtggc
ctcgacgtcgaccgcatcacccacgtcgtgaacttcgacatccccgtcgacatcgagtcc
tacgtgcaccgcatcggccgcaccggtcgcgcgggccgcaagggtgactcgatcagcttc
gtcacgccgcgcgagcgccggctcctgtcggccatcgagcgccacacgaagcagccgctc
acgcagatgcagctgcccacggtcgaggacgtcaacgagacgcgcctcagccggttcgac
gacgcgatcaccgcggcgctcgagcagcaggaccgcatcgagaagttccgtgacgtcatc
gcgcactacgtccgcaaccacgacgtgcccgccgaggacgtctcggccgcgctcgcggtc
gtggcgcagggtgactcgccgctgctgctcgacccggccgacgaccagctccgcaaccag
gtggaccgcgacggccgccgtggtgagcgccgcgaccgtgacgacgaccgtggtggccgc
gaggaccgtgggccgcgccgctcgcagccgatgaccgcctaccggatcgaggtcgggcgt
cgccaccgcgtcgagccgcgccagatcgtcggcgccctggcgaacgagggcggcctgcgg
cgcgacgacttcggcgcgatccagatccgacccgacttctcgatcgtcgagctgcccgag
agcatggacccgggcgtgctcgaccggctcgccgacacccggatcagcgggaagctcatc
gagatcgcgccggaccgccgcggcggtgcccgtcggtacgaccgcgacgaccgcggaccg
cgtgcgccccgtcgggacgaccgtccccgccgtgacgaccgccgcgacgacgaccgtccg
gcacgcaagccccggcactga
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