Cyprinodon variegatus (sheepshead minnow): 107083520
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Entry
107083520 CDS
T06110
Name
(RefSeq) LOW QUALITY PROTEIN: afadin-like
KO
K05702
afadin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04520
Adherens junction
cvg04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
107083520
04530 Tight junction
107083520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
PDZ_2
ASPP1-2_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
107083520
NCBI-ProteinID:
XP_015228313
Ensembl:
ENSCVAG00000016475
LinkDB
All DBs
Position
Unknown
AA seq
1845 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERQLDLDEKPLVVQLNWNKD
DREGRFVLKNENDILPKKSQSNGPDKEKDGVIQNFKRTLSKKEKKKDKKREKEFARIPDG
DEQILSREDGENNRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFMSSDGR
PESGGTIKIYADSLKPNIPYKTILLSTRDTADSAVVAALEKYGMEKENARDYCIARQEEK
TGKEVILDDSECPQQIFRDWPADRGPLVFQLKKRPPDYQARKGRKDEKGLRGKDGSMPPE
KLPYLVELSPGRGNHYAYYAYRHQEDGSDSRDKPKLYRLQHSITEVGSDCTEDGAIQLLG
PGILPHHCNLMHSEGMVTVTPHGPDADTFVDGQRVTETTVLRSGCTLQFGSAHVFKFVDP
MFDQGGKRDPNAAMRTRHKSGSVPETTFDLRGDVHSGGALPTSKVTNLLAFILNAALKES
MERGMVKPMIREDQDSRSQDLSADRTELTLPASIDFRENSEDTFLSAIINYTNSSTVHFK
LSPTYVLYMACRYVLSPTYRPDMSPSERTHKVIAIVNKMVSMMEGVIQKQKNIAGALAFW
MANASELLNFIKQDRDLSRITLDAQDILAHLVQMAFKYLVHCLQADLNNYMPAFLDDPEE
HNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDADSGLC
CHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSPQDVQNIHNTCF
KLNSLQLHALMTNYRCAQDEPYIPPDLIDHVVAVAENTADELARSDGREVQLEEDPDLQL
PFLLPEDGYSCDVVRHLPNGLQDFLDPLLQRGFCRLTPHPRSPGTWTVHFEGADNDNHFS
APDNSEMQMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQEKLGIYIKSVVKGGAADMDGRL
AAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQR
AADRGRDKNGKMRPKSEGFELYNNTVQNGDPESPQPGWDSYAEPKKMSGEDRLLKNRADH
RSSPNVANQGQSPATKSVYPGGPGTKITSVSTGNLCADEEPSPPRPEAYPIPTQTYPREY
FTIPASKSQDRVVGPGQMPPQHWQGMEDRERLPVVDNIHNSMQRINHSQEDLYPPAGMMR
PDERMQPLYPQEYQHRDLDYQHRGPPGGVGPPQDHWTPQPQVSSSLESSTSSQEHLNFSA
SSTSSNKGPNQKTGPGRWKTPNTPHAVPPHSVAPPSRSDLPPPPPPPPTVYPDAYEPQSE
LPLPPPPSTISPVMAQQAADRKKREEQQRWYEKEKARLEEERERKRREQERKLGQIRANP
VMPVQPHNNGGAMPPPHHQPPMASMAPPQPYHPPQPQPPPSRPEKLSSLPRSAVPPPASG
ANSSAMDTVIRELLPQQQPRTIERRDLQYITISKEELSTSDSLSPDPWKRDAREKAEKQQ
QLHIVDLLDKEIQELQAKPERTAEESDRLRKLMLEWQFQKRLQESKHSDEDEEEEDDEDM
DELIMQRLEAEKRARLQDEERRRKQQLEEIRKREAEERAKQEEERRWREEERVKREAGEK
RRQEEEYYNRLEAERRRQHEEAERKLLTPDEPAGLYRPPLPRXTNNPPPPPQRNTSYLKT
QVISPDTLYTAKFVPNAGDDEDEDEGFNSHTGNSTGVVGSGEVFKDPRDKWAKSQEQENS
IPSDAPESLTFKERQRLFSQGKEVSNKVKASRKLMELENELNTKQ
NT seq
5538 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaagcagggaggaggagaggaggaaactggccgacatcatcaaccactggaac
gccaaccggctcgacctgttcgagatcagtcagcccacagaggacctcgagttccatggc
gtgatgcggttctacttccaggaccgggtggcagggaactttgccacgaagtgcatcagg
gtctccagcacagcaacgacgcaggacgtcattgagacgttagcggagaagttcagaccc
gatatgaggatgctgtcgtcgccaaaatactccttgtatgaagtccatgtcagcggtgaa
gagcgccagttggacctggacgagaagcctcttgttgttcagttgaactggaacaaagac
gatagagagggtcggtttgtcctgaagaacgagaacgacatcctgcccaagaagagtcag
agcaacggaccagacaaggagaaagatggagtgatacagaacttcaaaaggacgctgtcc
aagaaggagaagaagaaggacaagaagagggagaaagagtttgctcggatccccgatgga
gatgagcagattctaagccgcgaggacggggagaacaatcgtctggcagcagaggtttac
aaagacatgccagagaccagcttcaccagaaccatttccaacccagaggtggtgatgaag
aggaggaggcagcagaaactggagaagcggatgcaggagttcatgagcagcgatggaagg
ccagagtcgggggggactatcaagatttacgccgacagtctgaaacccaacatcccctac
aagaccatcctgctgtccaccagagacacagcggactccgccgtggttgcagctctggag
aagtacgggatggagaaggagaacgccagggattactgcatcgcccggcaagaggaaaaa
acgggcaaagaggtgatcctggatgattcggagtgtccccagcagatcttcagagactgg
cctgcagacagaggaccgctggtgtttcagctgaagaagagacctccggactaccaggcc
aggaaaggaaggaaggacgagaagggcctcagaggaaaggacggctcaatgccgcctgaa
aaactgccttatttggtggagctgagtccaggccgagggaatcactatgcctactacgcc
tatcggcaccaagaagacggctccgactccagagacaaaccgaagctgtaccggcttcag
cacagcatcacagaggtcggttcggactgcacagaagacggagccatccagctcctcggc
ccgggaatcctgccccaccactgcaacctgatgcacagcgaaggcatggtgaccgtgacg
ccgcacggccccgacgccgacaccttcgtggacgggcagcgggtcacagagaccacggtc
ctccgctctggatgcaccctccagttcggctcagcgcacgtctttaaatttgtcgatccg
atgttcgaccagggagggaagagggatccaaacgccgccatgaggacccgacacaaatct
ggcagcgtaccagagaccaccttcgacctccgtggagacgtccacagtggaggggctctt
ccaacaagcaaggtgaccaacctgctagcctttatcctcaatgctgccctgaaggaatct
atggagagaggcatggttaaacctatgatcagagaagatcaggacagcaggtcccaggac
ctttcagcagacaggacagagctgactcttccagccagcatcgactttagagaaaactct
gaggacaccttcctgtcagccatcattaactacaccaacagctccacggtccacttcaag
ctgtcgcccacttacgtcctgtacatggcctgccgctacgtcctgtcgcccacctaccgg
cccgacatgtccccctctgagagaacgcataaagtcatcgccatcgtcaacaagatggtg
agcatgatggaaggagtcatccagaaacagaagaacattgcaggagcgctggctttctgg
atggccaacgcctccgagctgctgaacttcatcaagcaggaccgcgacctgagccgcatc
acgctggatgcccaggacatcctggcacacctggttcaaatggccttcaagtacctggtc
cactgtctgcaggctgatctcaataactacatgccagccttcctggatgaccctgaggag
cataatccacagaggcccaagatcgaggacgttctgcacacgctgaccggcgccatgtcg
ttgctccggcgctgccgggtcaacgccgccctcaccatccagctcttctcgcagctcttc
cacttcatcaacatgtggctgttcaacagactggtgaccgacgccgactctgggctgtgc
tgccactactggggggccatcctgcggcagcagctgagccacatcgaggcgtgggccgag
aagcaggggctggagctggctgctgactgccacctcagccggattgtccaggccaccacc
cttctcaccatggacaaatactccccgcaagatgtgcagaacatccacaacacctgcttc
aagctaaactccctgcagctccacgccctcatgaccaactaccgctgtgcccaggatgag
ccgtacatcccgcctgatctcatagaccatgtggtggcagtagcagaaaacacagcagat
gagctggcgaggagtgatggcagagaagtgcagctggaggaggatccggaccttcagctg
cccttcctcctcccagaggacggctactcttgtgacgtggtgcgccacctccccaacggc
ctgcaggacttcctggacccgctgctgcagagagggttctgtaggctgacgccgcatcct
cgctctcctggtacctggaccgtccacttcgaaggagccgacaatgacaaccacttctct
gcccctgacaacagcgaaatgcaaatgaggaaggagccggaggttgtcacggtaaccctg
aagaagcacaacggcatgggcctcagcatcgtagctgccaagggtgccggtcaggagaag
ctcggcatctacatcaagtctgtggtgaaaggcggagccgctgatatggacggccgtttg
gcagcaggtgaccaactgctgagcgtcgatggacgcagtctggtcggactgtcgcaggag
agggctgcggagctgatgacgaggacgggctctgttgtaacactggaggtggccaagcag
ggcgccatctaccacggcctggccacgctactcaaccagcccagcccaatgatgcagaga
gcagcagaccgaggccgggataagaacgggaagatgcgcccaaagagtgaaggcttcgag
ctgtacaacaacacggtgcagaatggcgatccggagagcccgcagcccggctgggactct
tacgcagaaccaaagaagatgagcggagaagaccggcttttgaagaaccgggctgaccac
cgctccagccccaacgtagccaatcagggccagagtcctgcaaccaaatcggtgtaccct
ggaggaccgggcactaagatcacctccgtctccaccggcaacctgtgtgcagacgaggag
ccgtccccgccccgcccagaggcctaccccatccccacccagacctaccctagagagtac
ttcaccatcccggcctctaagagccaggatcgggtggttggtccaggacagatgcccccg
cagcactggcagggcatggaggacagagagcgcctccctgtggtcgacaacattcacaac
agcatgcagcggattaatcactcccaggaagatctgtaccctccagcgggaatgatgagg
ccagatgagcggatgcagccgctctatccacaggaataccagcaccgggatttggactac
caacaccgaggtccgccaggaggtgtgggacctccacaggaccactggacgcctcagccg
caggtttcctcttcgttggagtcatcgacatccagccaggagcacctcaacttctcagct
tcttccacgtcttcaaacaaaggcccaaaccagaagaccgggccgggccgatggaagacg
cccaatacgccgcacgctgttccgccgcactctgtggcaccgccgtcccgctccgacctg
cctcctcctcctccgcccccgcctaccgtttacccagacgcctacgaaccccagagcgag
ctgccgctgccgccccctccctccaccatcagcccggttatggcccagcaagctgcggac
cgtaagaagagggaggagcagcagcgttggtatgagaaggagaaagctcggctggaggag
gagagggagagaaagaggagggagcaggagagaaagctgggtcagatccgggccaacccc
gtcatgcccgtccaaccccacaacaatggtggagccatgcctcctcctcaccaccagcct
cccatggcctccatggccccgccccagccttaccaccccccacagcctcagcctccacca
tccagaccagagaagctgtccagcctgccgcggtcggcagtgcctccacccgcttctggc
gccaactcctccgcaatggatacggtgatcagggagctgcttccgcagcagcagccgcgg
accatcgagaggagagacctgcagtacatcaccatcagtaaggaggagctatccaccagc
gacagcttgtctccagatccctggaagagagatgcccgcgaaaaggcagagaaacagcag
cagctgcacattgtggatctgttggacaaagagatccaggagctgcaggcgaaacctgag
cgaacagcagaggaaagcgaccgcctcagaaagctgatgctggagtggcagttccagaag
cggttgcaggaatccaaacacagcgacgaagatgaagaggaggaggacgatgaggacatg
gacgagctgatcatgcaaaggctggaggctgagaagagagccaggctgcaagacgaggag
cggcggcgtaagcagcagctggaggagatccggaagagggaggccgaggagcgagcgaag
caggaggaagagaggaggtggagggaggaggagagagtcaaacgagaggcgggggagaag
aggagacaggaggaggagtactacaaccgtctggaggccgagcggcggcggcagcacgag
gaagctgagagaaagctgctgacgcctgacgagccggccggtctgtatcggcccccgctg
cctcggnntactaacaaccccccacccccaccacagagaaacacctcctacctcaaaaca
caggtcatctcgccagacacgctctacacagccaaattcgtccccaatgcgggcgatgac
gaagacgaggacgaagggtttaactcgcacactggaaactcgacaggagttgtaggatca
ggagaggtgttcaaggacccgagggataaatgggcgaagagtcaggaacaggagaactcg
atccccagcgacgctccggagagtctgaccttcaaggagcgccagcgcctcttctctcag
gggaaggaggtttccaacaaggtcaaagcttcccgcaaactgatggagctggagaacgag
ctcaacaccaagcagtag
DBGET
integrated database retrieval system
