Cellulomonas wangsupingiae: NP075_04235
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Entry
NP075_04235 CDS
T09069
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cwn
Cellulomonas wangsupingiae
Pathway
cwn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cwn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NP075_04235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cwn03400
]
NP075_04235
Enzymes [BR:
cwn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NP075_04235
DNA repair and recombination proteins [BR:
cwn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NP075_04235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UUI66950
LinkDB
All DBs
Position
880399..881979
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AA seq
526 aa
AA seq
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MGTYRSMRDFAHTPEPAGAPAPAADGERRFVVQRHRARRLHYDVRFEIDGVLVSWAVPKG
PTLDPTARRMAVHVEDHPLEYEAFEGVIPHGQYGGGDVIVWDRGTWHPYKSDDPAAEVAG
GQLHAELHGERLRGKFLLVRRDSGDGKDQWLMFHKRDEHAVVGWDAEDHPTSVVSGRTND
EVAAHPDHIWRSGVPAAQADVDLHPPVPDVPPPTDDELAALDDLGASGTWDVHGRRLRVT
NLDKVLFPARDGEAPVTKRDLLRYTACVAPVALPYLAGRALNMHRFPQGAGTRGFWHKQL
PDHAPDWVPRWDNPAADPGETSTYLVVDEPAALVWAANFGALEWHAWTSRTAAPDLPTYA
LVDLDPGPATAWEDVVLLARLHRDAFEHLGVRAFPKLTGRRGIQIWVPVAVGPTFDETRA
WVERLSRTVGKVVPDLVSWRWEVSERGGQARLDYTQNAVNKTLVAPYSPRASAGAPVSAP
LSWDELDADWLRPDAFTVRTVLDRVAEHGDLFRGVLEGDQVLPRLT
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ctgggcacgtaccgctcgatgcgcgacttcgcgcacaccccggagccggccggggcgccc
gcccccgcggcggacggggagcgccggttcgtcgtgcagcgccaccgtgcgcgccgcctg
cactacgacgtgcgcttcgagatcgacggcgtcctggtgagctgggcggtgccgaagggc
ccgacgctggacccgacggcgcggcgcatggccgtgcacgtcgaggaccacccgctggag
tacgaggcgttcgagggcgtgatcccgcacgggcagtacggcggcggcgacgtcatcgtg
tgggaccgcggcacgtggcacccgtacaagtccgacgacccggcggccgaggtcgccggg
gggcagctgcacgccgagctgcacggcgagcggctgcgcggcaagttcctgctggtgcgc
cgcgacagcggcgacggcaaggaccagtggctgatgttccacaagcgcgacgagcacgcg
gtcgtgggctgggacgccgaggaccaccccacgtccgtggtgtccgggcggacgaacgac
gaggtcgcggcccacccggaccacatctggcgctcgggcgtccccgcggcgcaggcggac
gtggacctgcacccaccggtgcccgacgtgcccccgcccacggacgacgagctcgcggcg
ctcgacgacctgggcgcgagcggcacgtgggacgtgcacgggcggcgcctgcgggtcacc
aacctcgacaaggtgctgttccccgcgcgcgacggcgaggcgccggtcaccaagcgtgac
ctgctgcgctacaccgcgtgcgtcgcgcccgtcgcgctgccgtacctggcggggcgcgcg
ctgaacatgcaccgcttcccgcagggcgccggcacgcgcggcttctggcacaagcagctg
ccggaccacgcgcccgactgggtgccgcgctgggacaaccccgccgcggacccgggggag
acgagcacgtacctcgtcgtcgacgagcccgccgcgctggtgtgggccgcgaacttcggt
gcactcgagtggcacgcgtggacgtcgcgcaccgccgcgcccgacctgccgacgtacgca
ctggtcgacctcgacccgggcccggcgacggcctgggaggacgtcgtgctgctggcacgc
ctccaccgcgacgccttcgagcacctgggcgtccgcgcgttccccaagctcacgggccgt
cgcggcatccagatctgggtaccggtcgctgtcggaccgaccttcgacgagacgcgggcg
tgggtcgagcggctgtcacggaccgtcggcaaggtcgtgcccgacctcgtgagctggcgc
tgggaggtcagcgagcgcggcggccaggcgcgcctggactacacgcagaacgcggtcaac
aagaccttggtcgccccgtacagcccgcgcgcgtcggccggggcgccggtctcggcgccc
ctctcgtgggacgagctcgacgcggactggctgcggcccgacgcgttcacggtccgcacc
gtgctggaccgggtggccgagcacggcgacctgttccggggcgtgctggagggcgaccag
gtgctgccgcgcctgacctga
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