Gloeothece citriformis: PCC7424_4610
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Entry
PCC7424_4610 CDS
T00808
Name
(GenBank) ribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cyc
Gloeothece citriformis
Pathway
cyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC7424_4610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyc03019
]
PCC7424_4610
03016 Transfer RNA biogenesis [BR:
cyc03016
]
PCC7424_4610
Enzymes [BR:
cyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PCC7424_4610
Messenger RNA biogenesis [BR:
cyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PCC7424_4610
Transfer RNA biogenesis [BR:
cyc03016
]
Prokaryotic type
tRNA degradation factors
PCC7424_4610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
Dicer_dimer
P-mevalo_kinase
Motif
Other DBs
NCBI-ProteinID:
ACK72972
UniProt:
B7KBJ4
LinkDB
All DBs
Position
5109125..5111032
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AA seq
635 aa
AA seq
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MREFSSQVIQELETLKIPDYSNREPVLGFTIDAETSLDLDDAIWIEPTRRGAIVMVHITD
VTAIIPQGSALEAAAIERVETHYHTRTVDPMLPADLANNKLSLLEGQLRPTVTIQITLNH
NAEIEDTRVSLTQLTSLKKFSYVEAESVMNQPSDPFFSMIRYCDIWSQKLYWRRTTMGAI
GGTSISGLFLDEEGKPDQLRQYRSQQIIQEFMILANTAIAQLAAQHQLPILYRNHTASAI
APEKKIMIETLSALGMPDLIRSQLATWLNKATYNPYLVGHFALSIDAYCHFTSPIRRVAD
LLNHRMIKAVFIEHQAIPYTVEKLTKIADAINQYKEEYRQKNNEFFEAERAKRAQAILKI
PSQLQHLGEKEFSQILKNAVGTEKIVTVIPEIINRLQNKSIQPLDLYYLSKCDYSQPETQ
NLAEALIAYYQQAATRATQILQIKSQRDSTVVDYIYQQNASHHFACWCIVDNQTSLYPAK
GQNKQESKHYASILWWEQFFKQALVAPNDRVLEWEQNPEDLSEEEQDCNDVNPIETDEFN
DSVLSSQPDEQTELLTQVDNPIGYLNDKLPIMGIDKPQYEYRSLPQGWECTCKVIYQEET
ITGVQIASSKKEAKHSAALITLNKLEQKQVFSFES
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
gtgagagaatttagttcccaagttattcaagagctagaaaccttaaaaattccagattac
agtaatcgagaaccggtcttaggatttaccatagatgctgaaacttccctagatttagat
gatgccatttggattgaacccacccgacggggagcaatcgtcatggtacatatcactgat
gttaccgctattattccccaaggatctgctttagaagccgccgccattgaacgagtggaa
acccattatcacactcgtaccgttgatcctatgttaccggcagatttggctaataataaa
ctcagtttgttagaaggacagcttagacctaccgttaccatccaaattactctcaatcat
aatgcggaaatagaagacacaagggtctccctaactcaactcactagcctgaaaaagttt
tcttatgtcgaagctgagtcggtgatgaatcaacccagtgacccatttttttcgatgata
cgctattgtgatatctggtctcaaaaactctattggcgacgaacgacgatgggtgctatt
ggaggaacgtctatctctggtctttttttagatgaggaaggaaaacccgatcaacttaga
cagtatcgttcccaacagattattcaagaatttatgatcctggctaatacagcgatcgca
caattagcggcacaacaccaactccctatcctttaccgaaatcatacggcctctgccata
gcaccagagaaaaagattatgattgaaactttaagcgctttgggaatgccggatttaatt
cgatcgcaattggcaacttggttaaataaagccacctataatccctatttagtgggacat
tttgccttatccatcgacgcttattgtcattttacttctccgattagacgggtagcagat
ttgctcaaccatcggatgattaaagccgtatttattgaacatcaagctattccctatacg
gttgaaaaattaactaaaatcgctgatgccatcaatcaatataaagaagaatatcggcaa
aaaaataatgaattttttgaagctgagagagccaaacgagcgcaagccattttaaaaatc
ccctcccagctacaacatttaggggaaaaagaattttctcaaattctcaaaaatgcggtg
ggcactgagaaaatagtgaccgttatccctgaaattattaaccgcctacagaataaatct
attcaaccgttagatttatattatttatctaaatgtgattattctcaacccgaaacccaa
aatctagcggaggctttaattgcttattatcaacaagcagcaaccagagccactcaaatt
ttacagataaaatcccaacgagatagcactgtcgtcgactatatttatcaacagaatgct
agtcatcattttgcctgttggtgtatagttgataatcaaacgtcattgtatcccgctaaa
ggacaaaataaacaggaatcaaaacattatgcctcaattctctggtgggaacaatttttt
aaacaggctttagtcgctcctaacgatcgcgttttagaatgggaacagaaccctgaagac
ctatctgaggaggaacaagactgtaatgatgttaacccaatagaaacagatgagtttaat
gattcagttttatcctctcaacccgatgagcaaacagaattactaactcaagtggataac
ccgataggttatcttaacgacaaattgcccatcatgggcatcgataaacctcaatacgag
tatcgtagtctgccgcaagggtgggaatgcacttgtaaagttatctatcaagaagaaacc
attaccggagttcaaatcgcgtcatcgaagaaagaggcaaaacattctgccgccttaata
actttgaacaagctcgagcaaaaacaagttttttctttcgagtcttaa
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