Rippkaea orientalis PCC 8802: Cyan8802_3060
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Entry
Cyan8802_3060 CDS
T00968
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
cyh
Rippkaea orientalis PCC 8802
Brite
KEGG Orthology (KO) [BR:
cyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyh03021
]
Cyan8802_3060
Transcription machinery [BR:
cyh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cyan8802_3060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_11
HTH_10
HTH_24
MerR
MerR_1
HTH_29
HTH_Mga
HU-HIG
HTH_53
Motif
Other DBs
NCBI-ProteinID:
ACV01906
LinkDB
All DBs
Position
3096382..3097338
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AA seq
318 aa
AA seq
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MNVSKSSPDPVRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIA
QWAKAAKMTQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGM
QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQ
EKGRAATIAELAEELELTPRQVREYLERARQPLSLDLRVGDNQDTELGDLLEDTGQSPED
YATHSSLQLDLDRLMEELTPQQKEVLALRFGLSDGKPLTLAKIGSILNISRERVRQIERE
ALAKLRKRKANIREYLAS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtttctaaaagttctcccgatcctgtccgcgcttatttacgagaaataggtcgt
gttcctctactaacccacgaagaagaaatcctctatgctaaacgagtacagcgatttgta
gccttagaaaccctcaaagaatccttaaccgaagaattgggacaggaacctaccatagca
caatgggctaaagccgctaaaatgactcaaaaagaactccgatctgccattgaagcggga
gaagctgctaagcggaaaatggtggaagccaatttacgtctggtagtctccgtcgctaaa
aagtatctgaagcggaacctagatttactcgacttaatccaagagggaaccattgggatg
cagcgaggggtagaaaagtttgatcccaccaaaggctatcgcttttcgacctatgcttac
tggtggattcgtcaagccattacccgtgcgatcgcagaaaaaagccgaaccattcgctta
ccgatccatattaccgaaaaacttaataaaatcaagaaagcccagcgacaactttcccaa
gaaaaaggacgcgctgctaccattgccgaattagctgaagaactggaattaacccctaga
caagtacgggagtacctagaacgagcccgtcaacccttgtctcttgacttacgggtagga
gataaccaagacaccgaattaggggacttattagaagataccggccagtctcctgaagat
tatgccactcattcttctttgcagttggacttagatagactgatggaagagttgaccccg
cagcagaaggaagtgttagccttaagatttgggttatccgatggtaaacccctaacttta
gctaaaattggcagtatcttgaatattagccgcgaaagggttaggcaaatcgaacgggaa
gcattagcaaaattgcgaaaacgaaaggccaatattcgggaatatttggcgagttaa
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