Pseudodesulfovibrio aespoeensis: Daes_0176
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Entry
Daes_0176 CDS
T01382
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
das
Pseudodesulfovibrio aespoeensis
Pathway
das03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
das00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Daes_0176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
das03019
]
Daes_0176
03009 Ribosome biogenesis [BR:
das03009
]
Daes_0176
Enzymes [BR:
das01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Daes_0176
Messenger RNA biogenesis [BR:
das03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Daes_0176
Ribosome biogenesis [BR:
das03009
]
Prokaryotic type
rRNA processing factors
Daes_0176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF5351
Motif
Other DBs
NCBI-ProteinID:
ADU61203
UniProt:
E6VV52
LinkDB
All DBs
Position
197121..198590
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AA seq
489 aa
AA seq
DB search
MTDKSKRQKMFISVLPGEQVEVVIAEEGKVNEYYVEMLHQAKTKGDIYKGYIHNIDNGLQ
AAFINYGAERNGFLQIDEVHPEYYTGSYPMKKGARYPLMQKVLKAGQEVLVQVVKEPTGK
KGAFLTTYLSLPGRSFVYTVGRGQMGVSRKIENEKERDRLKKALESFTTTEGVGLIARTA
AIGQSKAALERDYKYLNRLWEDIRANAQKVKAPAMVYQELGLAARAVRDYLTLDVTEIWV
DDTLTFEQISQFVKLAFPRKNNLVKLHEDTDLSLLERFNLVKQVQEIYSREASMPSGGRL
VFDATEALTAIDINSGKIGGEKNFQKMALKTNLEAATEIARQLRLRDIGGQVVIDFIEMK
NPKDCREVEKVMKAEMKNDRARTDVSRISPFGLMELVRQRLGSSAIAISTEPCPCCKGTG
IRRNMEWQAMQALKDIHREARKPGQDLVEYTCEEELAIYLLNNKRGVLADLEIRYGKRIH
VDIEYEYDE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaagagcaaacggcagaagatgttcatctccgtgctgccgggagaacaggtt
gaggttgtcatcgccgaagagggcaaggtcaacgagtattacgttgagatgctccatcag
gccaagaccaagggcgacatctacaaaggctacattcacaacatagacaacgggcttcag
gccgccttcatcaactacggggccgagcgcaacggatttctccagatcgacgaggtccat
cccgaatactacacgggcagctaccccatgaagaagggtgcgcgctacccgctgatgcag
aaggtgctcaaggcgggccaggaagtgctggtccaggtggtcaaggaacctaccggcaag
aagggcgcctttctgaccacctatctctccctgccgggccgcagctttgtctacaccgtg
ggccgcggccagatgggcgtctcgcgcaagatcgagaacgagaaggagcgcgaccggctg
aaaaaggcgctcgaatccttcaccaccaccgagggcgtgggcctcatcgcccgcaccgcg
gccatcggccagtccaaggccgcccttgagcgcgactacaaatacctgaacaggctgtgg
gaggatatccgggccaacgcccagaaggtcaaggccccggccatggtctaccaggagctc
gggctggccgcccgcgccgtgcgcgattatctgacgctggatgtgaccgagatctgggtg
gacgacacgctcaccttcgagcagatcagccagttcgtgaaactcgccttcccgcgcaag
aacaacctggtcaagctgcacgaggacacggacctgagcctgcttgagcggttcaacctg
gtcaagcaggtgcaggaaatctactcccgcgaggcgtccatgccctcgggcgggcggctc
gtctttgacgccaccgaggccctgaccgccatcgacatcaactccggcaagatcgggggc
gagaagaatttccagaagatggcgctcaagaccaacctggaagccgccaccgagatcgcc
cgccaattgcgcctgcgcgacatcggcgggcaggtggtcatcgacttcatcgagatgaag
aaccccaaggactgccgcgaggtggagaaggtcatgaaggccgagatgaagaacgaccgg
gcgcgcaccgatgtcagccgcatctctccctttggcctgatggagctggtgcgccagcgg
ctgggctcgtcggccatcgccatctccaccgagccgtgcccctgctgcaagggcaccggc
atccggcgcaacatggagtggcaggccatgcaggccctcaaggacatccaccgcgaggcg
cgcaagccgggccaggatctggtggagtacacctgcgaggaggagctggccatctacctg
ctcaacaacaagcgcggcgtgctggccgatctcgaaatccgctacggcaagcgcatccac
gtggacattgaatacgagtacgacgaatag
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