Pseudodesulfovibrio aespoeensis: Daes_2173
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Entry
Daes_2173 CDS
T01382
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
das
Pseudodesulfovibrio aespoeensis
Pathway
das03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
das00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Daes_2173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
das03019
]
Daes_2173
Messenger RNA biogenesis [BR:
das03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Daes_2173
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ADU63179
UniProt:
E6VST5
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Position
complement(2385875..2387533)
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AA seq
552 aa
AA seq
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MADTTSLTFYPLGGLGEIGMNCMAFKTERSMVLVDCGLMFPEDYHFGVDVVIPCFDFVLK
NKAILNGIVLTHGHEDHIGALPWLLQNLDVPVYGSQFTLGLVENKLREHDLARWADLRTV
RPYDRVLLGDFTFNFFPVCHSIIEGFGLGIETPVGRVVHTGDFKIDRNPMGGHATDLAAF
RRFSEPGVRLMLSDSTNVGREGFALTEREIKVSLREIFSTAKGRILVSLFSSHIQRIQEV
FDLADAEGRKVAVSGKSLVRNIELARDLGYLKIPKGIYIELDRLDEFGDSDLVLLITGSQ
GEPLAALSRMALGEHRQITVKPEDLYILSSRFIPGNVRAITRVINNLYRLGAEVLYEKMH
GVHASGHAHAGELTLMLETVRPRYFIPVHGEYRHLVKHSRLAVDCGVEESCALVVEDGQP
VIFEADGSMRMGQPFRAEKILVDGKGVGDVGQSVLRERQLLAGEGMVIVVLVVDEATGEI
SMGPDIMSKGFIFEQQYMHLLDDAKCIVLDVHENIAPGDTAKLKERIRSALRRFFRKVLG
RDPVVVPLVITI
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacgacgtcactcactttttatcccctgggcggtctcggcgagatcggcatg
aactgcatggccttcaagaccgagcggtccatggtcctcgtggattgcgggctgatgttc
cccgaggattaccacttcggcgtggacgtggtcattccttgcttcgatttcgtgctcaag
aacaaggccatcctgaacggcattgttctgacccacggccacgaggaccacatcggcgcg
ctgccctggctgctccagaacctcgatgtgccggtctacggcagccagttcaccctgggg
ctggtcgagaacaagctgcgcgagcacgacctcgcaagatgggcggatcttcggaccgtg
cgtccctatgaccgggtgctgctcggcgacttcaccttcaatttctttccggtctgtcac
tccatcatcgaagggttcgggcttggcatcgagaccccggtgggccgggtggtccacacc
ggcgacttcaagatcgaccgcaaccccatgggcggacacgccacggatctggccgcgttc
cgcaggttttccgagccgggcgtgcggctcatgctctcggactccaccaacgtgggccgg
gaggggttcgccctgaccgagcgcgagatcaaggtcagtctgcgcgagattttttccacg
gccaaggggcggattctcgtctcgctcttttcgagccacatccagcgcatccaggaggtc
tttgacctggccgacgccgagggccgcaaggtggcggtgtcgggcaagtcgctggtgcgc
aacatcgagctggcgcgcgacctggggtacctgaagatacccaaaggcatctatatagag
ctggaccggctggacgagttcggcgattcggacctggtcctgctgatcaccggctcccag
ggcgagccgctggccgccctctcgcgcatggccttgggcgagcatcggcagatcacggtc
aagcccgaagatctctacattctttcgtcccggttcataccgggcaacgtccgggccatc
acgcgggtcatcaacaacctctaccggctcggtgccgaggtgctctacgagaagatgcac
ggggtccacgcctcgggccacgcccatgcgggcgagctgacgctcatgctggaaaccgtg
cggccccggtacttcatcccggtgcatggcgaatatcggcatctggtcaagcacagccgg
ctggccgtggactgcggggtggaggagtcgtgcgccctggtggtcgaggacgggcagccg
gtgatcttcgaggcggacggctccatgcgcatggggcaacccttcagggccgagaagatc
ctggtggacggcaagggcgtgggcgacgtgggccagagcgtgctgcgcgaacgccagctc
ctggcgggcgagggcatggtcatcgtggtcctggtggtggacgaggccaccggcgagatc
agcatgggcccggacatcatgtccaaggggttcatcttcgagcagcagtacatgcacctg
ctcgacgacgccaaatgcatcgtgctcgacgtgcatgagaacatcgcgcccggagatacg
gccaagctcaaggagcgcatccgctccgcgctcaggcggtttttccgcaaggtgctgggc
cgcgaccccgtggtggtgccgctggtcatcaccatttga
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