Desulfomicrobium baculatum: Dbac_3349
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Entry
Dbac_3349 CDS
T00963
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dba
Desulfomicrobium baculatum
Pathway
dba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dbac_3349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dba03019
]
Dbac_3349
03009 Ribosome biogenesis [BR:
dba03009
]
Dbac_3349
Enzymes [BR:
dba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dbac_3349
Messenger RNA biogenesis [BR:
dba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dbac_3349
Ribosome biogenesis [BR:
dba03009
]
Prokaryotic type
rRNA processing factors
Dbac_3349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF5351
Motif
Other DBs
NCBI-ProteinID:
ACU91421
UniProt:
C7LPT9
LinkDB
All DBs
Position
3782491..3783963
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AA seq
490 aa
AA seq
DB search
MGEKQKRKMFISVLPGEQVEVAIMEDGVVCEYYVEMLHQSKTKGNIYKARIHNVDQALQA
AFINYGAEKNGFLQVDEVHPEYYQGDVPSRGKYPPLQKVLKPGQEVLVQVVKEPTGSKGA
FLTTYLSIPGRYFVLTPGREQLGISRKIEDEKERDRLKEVVEELKLDEGLGVIVRTVSES
QSKSSLSRDLQFLKRLWKEIRKKGISSESPALIYEEKDLAFRAIRDYLTPDIAECWVDDD
ETAKQITDFAALIFPRRKTFIKVHSETERTLYERFRIEAQLQKIFSRSVNLPSGGQLVID
HTEALTAIDINSGKIGGEKNFKEMALRTNIEAAQEIPNQLMLRDIGGQIVVDFIEMKDGK
HIREVEKVLRQALKVDRARTDIGRISKFGLLEIVRQRLGTSALSGSLEPCPHCSGAGTRR
NLEWRSMQALKDIYRELRKDKSFEPFTYKTDADLMQYLVNRKREKLMEFEQTFGRKIFVM
PTETPNCAFC
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagaagcagaagcgcaagatgttcatcagcgtgctgcctggcgaacaggtggaa
gtggccatcatggaagatggcgtggtgtgcgaatattatgttgaaatgctccaccagagc
aagaccaagggaaacatctacaaggccaggatccacaacgtggaccaggccctgcaggcc
gccttcatcaattacggggcggaaaagaacggatttttgcaggtcgacgaggttcatcct
gaatattaccagggcgatgtgcccagccggggcaagtacccgcccctgcagaaggtttta
aagcccggccaggaagtgctggtgcaggtggtcaaggagccgaccggctccaagggtgca
ttcctgaccacgtatctgtccatccccggccgctatttcgtactcacccccggccgcgaa
cagctcggcatttcccgcaagatcgaagatgaaaaggagcgcgaccgcttgaaagaggtc
gtcgaggagctcaagctcgacgaaggcctgggcgtcatcgtgcgcacggtcagcgagtcc
cagagcaagagcagcctgtcgcgggatttgcagttcctgaagcgcctgtggaaagagatc
cgcaaaaagggaatctcctctgaatccccggcccttatctatgaggaaaaggatctggcc
tttcgggccatccgcgactacctcactcccgacatcgccgaatgctgggttgatgatgac
gagaccgcgaagcagatcactgatttcgccgcccttatttttccccgccgcaagacattc
atcaaggtgcactccgaaaccgagcggactctgtatgagcgttttcgcatcgaggcgcag
ctgcagaagattttcagccgtagcgtcaatctgcccagcggcggccaactggtcatcgac
cacaccgaggccctgacggccatcgacatcaactccggcaagatcggcggcgaaaagaat
ttcaaggagatggctctgcgcaccaatatcgaggccgcgcaggaaatccccaatcagctc
atgctgcgcgacatcggcggccagatcgtggtcgatttcatcgagatgaaggacggcaag
cacatccgcgaagtggagaaggtgctgcgccaggccctgaaagtcgaccgtgcgcgcacg
gatatcggccgcatctccaagttcggcctgcttgagattgttcgccagcgtctgggcacg
tcggccctgtccggaagcctggagccgtgtccgcactgctccggcgcgggcacccgccgc
aatctggaatggcgctccatgcaggcgttgaaagacatttatcgtgaactgcgcaaggac
aagagctttgagccgttcacctacaagacggacgcggatctcatgcagtatcttgtcaac
cgcaagcgggaaaagctcatggaatttgagcagacattcggtcgcaagatcttcgtcatg
cctacggaaacgcccaactgcgcattttgctag
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