Desulfomarina profundi: DGMP_18200
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Entry
DGMP_18200 CDS
T07650
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dbk
Desulfomarina profundi
Pathway
dbk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DGMP_18200 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbk03400
]
DGMP_18200 (recD)
Enzymes [BR:
dbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DGMP_18200 (recD)
DNA repair and recombination proteins [BR:
dbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DGMP_18200 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
SH3_13
Viral_helicase1
Helicase_RecD
UvrD-helicase
AAA_22
nSTAND3
T2SSE
SLFN-g3_helicase
CbiA
PIF1
AAA_25
TrwB_AAD_bind
AAA_28
SRP54
NTPase_1
AAA_29
Motif
Other DBs
NCBI-ProteinID:
BCL61127
UniProt:
A0A8D5FWC2
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All DBs
Position
complement(1967237..1968898)
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AA seq
553 aa
AA seq
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MKVDRKQNLLELHLARFLTARSQLAGEEKVKFHDLVLRLGEVMGEGHTCLEVSREEETFL
RGICLVGEQSDGKLPLILFRGRLYLQKYFFYESRLASKLRMMAQRKYIAGIEMERLLDLY
FGPAGDEKDWQREAAMVAVKKGLTIISGGPGTGKTTTIVKLLAVLLQLGNQEMVIGLCAP
TGKAAMRLQQAVRTGGAALGLSPEITDRISGEAMTLHRLLGVKKYSSGFRHDRNNLLVHD
LLVVDEASMVDLALMSKLVDALKPDCRLVLLGDKDQLVSVESGAVLADCIRSLPGNTVEL
KKTWRFESGIKEFARAINEGNSASAWAVLEDENIDNITLLQGDIARFVGRKYITYMAAIA
GVGNGDVQFDAVFRAFSRFQVLCAVHYGEKGVEGINRQVENSLTVSVGSGTPYQVLPGEW
YPGRPIMVTRNDYTLGIYNGDIGICLPDPASGDLKIWFEGSGGSFMSCFPSRLPPHETAF
AITIHKSQGSEFEEVLLVLPDGENRVLCRELLYTGVTRAGKHVTLAGERKVFDYGLSRPV
RRFSGLREQLMSF
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttgacaggaaacagaatcttctcgagctgcaccttgcccgttttcttacagcc
cgctcacaacttgcaggagaagaaaaagttaaattccatgatctggttttgcgtctcggg
gaagtgatgggtgaggggcatacctgtcttgaggtttcaagagaagaagagacttttctt
cgtggaatctgtctggttggagagcaaagtgatgggaagttgcctttgatactttttcgg
ggcagactctacctgcagaaatattttttctatgaatccaggctggcctcaaaactgcgt
atgatggcacagcgtaaatatattgcgggaatagaaatggagaggttgcttgacctctat
tttggcccggccggagatgagaaggactggcagagagaggctgcgatggttgcagttaaa
aaagggttgaccataatttcaggaggtccgggaacaggaaaaacaactactattgtgaag
ctgctcgctgttcttctccagttgggtaatcaggaaatggtgatcggtctctgtgcccca
acaggaaaggcggccatgcgattacagcaggcggtaagaacaggaggggcagcactggga
ttgtcacctgaaataactgacaggatttcaggtgaggccatgactctccaccggttgctg
ggagtgaaaaaatattcgtctggttttcgtcatgatcgaaataatcttctggttcatgat
cttcttgtggtcgatgaagcgtccatggttgatctcgctttgatgagtaaactggtggat
gcacttaaaccggattgtcgcctggtgttgttgggagataaagatcaactggtctcagtg
gaatccggagccgttcttgccgattgcatcaggagtctgcctgggaatacggtcgaactc
aagaaaacctggaggttcgaaagcggcatcaaggaatttgcccgggctataaacgaggga
aacagtgcttccgcgtgggctgttcttgaagatgagaatattgacaatataaccttgctg
cagggtgatatcgccaggtttgtcggtagaaagtacataacatacatggccgctattgca
ggagtgggtaacggtgatgtccagtttgatgctgttttccgtgcgttttcccggtttcag
gtattgtgtgctgtccactatggtgaaaagggagtggaggggattaaccggcaggtggaa
aattctcttacggtatcggtgggttcaggaaccccgtatcaggttctgccgggggaatgg
taccctggaagaccaattatggtaacacgtaacgattatacgcttggtatatataatggt
gatatcggaatatgtctgcccgatccggccagcggtgatctgaaaatctggtttgaaggc
agcggcgggagcttcatgagctgttttccttcacgtcttccaccccatgaaacagctttt
gccatcaccatacataaaagccagggatcagaatttgaagaggttctcctggttcttccg
gacggagagaacagggttctctgcagagaactactgtataccggagtgaccagggctgga
aaacatgtcacattggccggcgaaagaaaggttttcgattatggcctgagcagaccggtt
cgtcgtttcagcggcctcagggagcagttaatgtctttctga
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