Desulfomarina profundi: DGMP_18210
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Entry
DGMP_18210 CDS
T07650
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dbk
Desulfomarina profundi
Pathway
dbk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DGMP_18210 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbk03400
]
DGMP_18210 (recB)
Enzymes [BR:
dbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DGMP_18210 (recB)
DNA repair and recombination proteins [BR:
dbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DGMP_18210 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
DEAD
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
BCL61128
UniProt:
A0A8D5JDH9
LinkDB
All DBs
Position
complement(1968888..1972427)
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AA seq
1179 aa
AA seq
DB search
MVEPRIFDPVHSPLKRGVNLVEASAGTGKTYAIAMLVLRAVVELEMTIDRILVVTFTRAA
AEELRGRIRSRLVEGRDILNTTQAGTADTELFDEVLVQWAATVRDKDRALGLLELALFDI
DRAGIFTIHGFCQRMLADYAMESGQLFDMELLADVDSVRKEMVDDFWRKNVYPLDSLSCA
LLLDSFADPEQLLDSVCGATGKGFRVEPEAPDLDESIHTLTEAHRKMARWWRKKKSELFH
QLLPLVENGGFKKAFVDSFEKWWKESDDFFIQGTPVSVPDLVFLKKEELLNKLNGRKYRT
PQKKEAVAEEWSLPGEILDTLLGAMEQLLLSFRVKLARELRDGIVFRLDRLGLLSFDDLI
DRLAAALGENESGLRRVIRRRFTMALIDEFQDTDSSQWTVFSSLFAVAGHYLYLIGDPKQ
SIYRFRGADIHSYFLARERAEHHLTLDKNFRSHPFLVEEVNRIFSGRDKPFLLEKKYIEF
LPVKSGVEADLAPGKLPAGLFYCMLPENSDSADGSWSSSKAGQHFLGYIRAEIISLLEGD
TEIRLKNGKERKLLPKDIAILVRSNRQARGSLEELTQAGIPAVISSSRSVYESIECRELL
TLLEAVAAPGDITLVKKAMALRWFGFSGDELYRLWNDEPRFSGWHDRFLKYNELWQNSGF
LVMMNRLIVDEDVYIALTAEKGGERTVTNIQHLLEIVQELESVEHLQMGQILLRLKRMMD
STAKSEDGELRLETDAEAVRIITMHSAKGLEFPIVFCPWLWYKTTGWRNNQPCVLARDSN
GKPLLDLGSEKFMERREQVLYEEMAEELRLLYVTLTRATIRSYVMWADVKKGRSVNDSFE
SALGYLLFPQGRCSSEEQVVELEKRCRQGVSCLVVPSDIPAVSWKPAVQGTELSVKEVSA
KNLHTDWQMSSYSSLTGLSEYGQEQKTEGTGKAEEVQAIPVPGLPAGPQFGNIVHDILET
IPFHVLTQPVDCAGEILVICRKYGIHLEAELLYRLLQNCVTTPVCPGNRGKKFTLGSLPE
QDLLKEMEFYFQMSRVDTQFINSVLAGEPTVIPLGRKKMEGYLTGLMDLVCEFEGRFYIV
DYKTNYLGDTLADYCGEKLIQAMASHNYGLQFWIYSVVLHRYLKNIVPSYSYQEHFGGVF
YLFVRGMVPETVNSGVFFTLPDSRKIKVLERIYGGEYEG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaccacgtatttttgacccggttcattctcctctgaagaggggtgtcaatctg
gtggaggccagtgccgggacaggtaagacttatgccattgccatgctcgttctgcgggcg
gtggttgagcttgaaatgaccattgatcgcattctggttgtcacatttaccagggcagcg
gcggaagagctgcggggcaggattcgtagccgtcttgttgaggggagggatatactcaac
actacacaggcgggaactgcggacacagaattatttgatgaggttctggtgcaatgggcg
gcaactgtcagggataaggatagggccctggggctcctggaactggcgcttttcgatatt
gatcgtgccggtatctttacgatccatggtttctgccagagaatgcttgcggactatgcc
atggagagtggccagctgtttgatatggaactcctggctgatgtggattcagtccgaaaa
gagatggttgacgatttctggcgaaaaaatgtttatcccctggattctctatcctgtgct
ttgctgctggattcgtttgccgaccctgaacagctgttggacagtgtctgtggtgctacg
gggaaaggatttcgtgtggagccggaggcgccggacctggacgagagtattcacactctt
acggaggcccaccggaaaatggctcgctggtggcggaaaaagaagtcggaactgtttcac
cagctgctgccgttggttgagaatggaggttttaaaaaagcgtttgttgattcctttgag
aagtggtggaaagaatcagacgatttttttatacagggtacacccgtatcagtgccagat
cttgtttttctgaaaaaggaagagctgctgaataaattaaacggaaggaaataccgtact
ccccaaaaaaaggaagcagtggctgaagagtggagtctgcctggagagatacttgacact
ttgctgggggctatggagcagctgcttctttcttttcgcgtaaaacttgcccgggaactg
agggacggaattgtctttcgactggacagattgggattgctttcctttgatgatctcatt
gaccgcctggcagcagccctgggggagaatgagagtggcttgcggagggtgatccgtcga
cggttcaccatggcacttattgatgaatttcaggatacagacagcagccagtggaccgtt
ttttcatctcttttcgcagttgccggtcattatctctatctcattggagacccgaaacaa
tccatataccggtttcgtggtgccgatatccactcctattttctcgccagggaaagagcc
gaacatcacctgaccctggataagaatttccgatcccatccctttcttgtggaggaggtc
aatcgtattttttctggtcgtgacaaaccgtttcttctggagaagaagtatatcgagttc
ttgccggtcaaatcaggtgtggaagccgatttggcgccaggtaagcttcctgctgggctc
ttctactgtatgcttccggaaaattcggattctgctgacggcagctggtcaagcagtaag
gcgggacagcattttcttggctatatcagggccgagattatcagccttcttgagggagat
acagagattcgcctgaagaacgggaaagaacggaaactgcttccgaaagatattgccatc
cttgtgcgcagcaaccggcaggctcggggcagtttggaggaattgacacaggcagggatt
cccgccgttatttcgtcgagcagatccgtctatgaaagtattgagtgtcgggaactgctc
acccttctggaagctgtagctgctccgggagatattactcttgtgaaaaaagccatggct
cttcgctggttcggtttcagcggagacgaactgtatcgattgtggaatgatgagcctcgt
ttcagtggctggcatgaccgttttctcaagtataacgaattatggcagaattccgggttc
ctggtaatgatgaacaggctgattgtggatgaggatgtctatattgcactgacggccgaa
aagggtggagagaggacggtaaccaatatacagcatctgcttgaaattgtgcaggaactg
gagagcgtcgagcatctgcagatgggtcagattctgctccggttgaagagaatgatggat
tcgacagcaaaatctgaggatggggagttgcggctggaaacggatgcagaggctgttcga
atcattaccatgcacagtgcaaagggtctggaatttcccatagtcttctgtccatggctc
tggtacaagactactggctggagaaacaatcagccgtgtgtgcttgccagggacagcaat
ggaaaaccgcttcttgatctgggctctgaaaaatttatggagagaagggagcaggtttta
tatgaagaaatggccgaagaacttcgactgctttacgtgaccttgaccagggccacaatt
cgcagctatgtaatgtgggcagatgtgaaaaaagggagaagtgttaacgattcttttgag
tcagcccttggttaccttctttttccccagggaaggtgttcaagtgaagagcaggtcgtg
gaactggaaaaacgatgcagacagggggtgagctgtcttgttgttccttcggatatacct
gcagtctcatggaagcctgctgttcagggcacagagttgtcagtgaaggaagtttctgca
aaaaatctccatacggactggcagatgtccagctattcctccctgaccggtctcagtgaa
tatggccaggaacagaaaactgaaggaaccgggaaagcggaggaggttcaggctattcct
gtccccggtcttcctgcgggtccccaattcggtaatatcgtacacgatatactggaaacg
atacccttccatgttctgacacaacctgttgactgtgccggagaaattttagttatctgc
aggaaatacggtattcatctagaagcggaactgctgtacagacttctacagaactgtgtg
acgactcctgtttgccccggaaacaggggaaagaagtttactcttggttcacttcccgaa
caggatctgctcaaggaaatggaattctacttccagatgagtcgggtcgacacgcaattt
atcaacagcgtacttgccggagagccgacagtcattcctcttggacggaaaaagatggaa
ggatatcttaccggtttgatggatcttgtctgtgaatttgaaggcaggttttacatagtt
gactataaaacgaattatctgggtgacaccctggccgattattgtggggaaaaactgatc
caggcaatggcctcccataattacggtctacagttctggatatacagtgtcgttctgcat
cgttacctgaaaaatattgtgccatcttacagttatcaggaacattttggtggtgttttt
tatctctttgttcgcggtatggtaccggaaacagttaacagtggggtttttttcacgctg
ccggacagcaggaagataaaggttttggagcggatttacggaggggagtatgaaggttga
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