Desulfarculus baarsii: Deba_1623
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Entry
Deba_1623 CDS
T01284
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dbr
Desulfarculus baarsii
Pathway
dbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Deba_1623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbr03400
]
Deba_1623
Enzymes [BR:
dbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Deba_1623
DNA repair and recombination proteins [BR:
dbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Deba_1623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
RecG_dom3_C
AAA_30
ERCC3_RAD25_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADK84991
UniProt:
E1QHE8
LinkDB
All DBs
Position
1797885..1801328
Genome browser
AA seq
1147 aa
AA seq
DB search
MRDDGAALIGGVEGAARAFALARLWLDIPGPTLVVCPTLPVAETLCRDLEFFLGAAGPVR
LFPSYEVSPYQGVDPPAEVTARRLAILWELIAEERPLIVVTSARALAGRQPPPEHLVDHS
LVVEPGATLERDELVRYLVDGGYSPAPLVEQVGDFAVRGSVVDFFGPLLDDPVRVEFFGD
EIDSVRRFDPVDQRSQLPLTGATLIPCLPVELSAPAVERAVERLRRLAKDEGLGARRLSE
LVERLERRAPFAGLEGLLPLFFQRSGDLFDYLPEGCRRVVIEPAEVEARLRAEQERLAEG
FAQAREEGAIVLAPEMLCRTPAQVQQRLAAGPRLLCRALAMGGEEQGGRAIRLRAAAHTG
LRQELCRGGEGSLIASLLQWCAAKNEQGRQVALVCRSRTQVERLAELLAQREAPCRVIQA
PAQAEGFVRRPEDSLLLLQGGLTVGFEPDDLPLCFVTEDEIFGAPRIVRQKAPPKLSAML
AALDDLAPGDLVVHIDHGVGRYQGLKTMAVGAAESDFLEISYKDGDRLYLPADRMALISK
YRGPDGAAPALDRLGGKAWAKAKGRVKKAVETIAHDLVELYAARQASKGFAFTPPDGAYR
EFEAGFPYEETPDQAQAIEDVIADMITDKPMDRLVCGDVGYGKTEVALRAAFLAAMQGKQ
VAFLAPTTVLTEQHCQTLTQRLKDQPLVVESLSRFKTPAQQKDILERLRQGKVDILVGTH
RIIQKDAVFKDLGLVIVDEEQRFGVKDKERLKKMRRLVDVITLTATPIPRTLQMSLSGVR
DLSVINTPPEDRQSIKTYLSAFSPGGVSEAVARELERGGQVFFVHNRVQDLDKMAGLVRR
LAPQARVAMAHGQMAEKELEKVMLQFVHKEVDVLVCTTIIESGLDIPSANTIIINNADKF
GLSQIYQLRGRVGRSAQRAYAYLFIKSEAALSSDARKRLKALMDFTQLGSGFAIAMHDMQ
IRGAGNMLGEAQSGMAAEVGYELYLGMLEDAVARLKGEAPSEGPEPEMNLALPASLPEGF
VPDADVRLSLYKRLSAARGQEDVEAIGAELADRFGPPPRAVSNLLESVSLKALLRRMHAT
RLDLAAEALTVQFTQTTALDLERLLDMAQSQPDKLRVFPDGKVHLKLEPDQEPMAGARRF
LEHIAQA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacgatggcgcggccttgatcggcggcgtggagggcgcggcgcgggcctttgcc
ctggcccggctgtggctggacatccccggtcccacgctggtggtctgcccgaccctgccc
gtggccgagaccttgtgccgcgatctggagttttttctgggcgcggccggtccggtgcgc
ctgttcccttcctatgaggtctcgccctaccagggcgtggatccgccggccgaggtcacg
gcgcggcgtctggccatcttgtgggaactgatcgccgaagagcggccgctgatcgtggtg
acctcggcccgggccctggccggccgccagccgccgcccgagcatctggtcgatcattcg
ctggtggtcgagccgggcgcgacgctggagcgcgacgaactggtgcgctatctggtcgac
ggcggctacagcccggccccgctggtcgagcaggtgggcgatttcgccgtgcgtggctcg
gtggtggacttttttggcccgctgctcgacgacccggtgcgcgtggagtttttcggcgac
gagatcgacagcgtgcggcgttttgatccggtggatcagcgctcgcaactgcccctgacc
ggggccacgttgatcccttgcctgccggtggagctttcggccccggcggtggagcgggcg
gtggagcgcctgcgccggctggccaaggacgagggcctgggcgcgcggcggctgagcgag
ctggtcgagcgcctggagcggcgcgcgccctttgccgggttggaaggcctgctgccgctg
ttttttcagcggtccggcgatctgttcgactatctgcccgagggttgccgacgcgtggtc
atcgagccggccgaggtggaggcccgcctgcgcgccgaacaagaacgcctggccgagggc
tttgcccaggcccgtgaggaaggggccatcgtcctggccccggagatgctttgccgcacg
ccggcccaggtccagcagcgtctggccgccgggccgcgcctgttgtgccgggccctggcc
atgggcggcgaggagcagggcggccgggccatccggctgcgggcggcggcccacaccggc
ctgcgccaggagctttgccgcggcggtgagggctcgctgatcgccagccttttgcagtgg
tgcgcggccaaaaacgaacaaggccgccaggtggcgttggtctgccgctcgcggacccag
gtcgagcgcctggccgagctgttggcccagcgcgaggccccttgccgggtgatccaggct
ccggcccaggccgaaggttttgtccgccggcccgaggacagcctgcttttgttgcagggc
gggctgacggtgggcttcgaacccgacgacctgccgctgtgttttgtcaccgaggacgag
atcttcggcgcgccgcgcatcgtgcgccaaaaagccccgcccaagctcagcgccatgctg
gccgccctggacgacctggcccccggcgatctggtggtgcatatcgaccacggcgtgggt
cgctaccaaggcctcaagaccatggccgtgggcgcggccgaaagcgattttctggagatc
agttacaaggacggcgaccgactctacctgccggccgaccgcatggcgctcatctccaag
tatcgcgggcccgacggcgcggccccggcgctggaccgcctgggcggcaaggcctgggcc
aaggccaagggccgggtcaaaaaagccgtggagaccatcgctcatgatctggtcgagctt
tacgccgcccgccaggcctccaagggctttgccttcaccccgcccgacggggcttaccgc
gagttcgaggccggcttcccctacgaagagacgcccgaccaggcccaggccatcgaggac
gtcatcgccgacatgatcaccgacaagcccatggaccggctggtctgcggcgacgtgggc
tacggcaagacggaagtggccctgcgcgcggcgtttctggcggccatgcagggcaaacag
gtggccttcctggccccgaccacggtgctgaccgagcaacattgccaaaccctgacccag
cgcctgaaggatcagccgctagtcgtcgagtcgctcagccgtttcaagacgccggctcag
caaaaagacatcctcgaacgcctgcgccagggcaaggtcgacatcctggtgggcacccac
cgcatcatccaaaaagacgccgtgttcaaggacttgggcctggtcatcgtcgacgaggaa
cagcgctttggcgttaaagacaaagagcgcctgaaaaagatgcgccgcctggtcgacgtg
atcaccctcacggccacgcctatcccgcgcacgttgcaaatgagcctttcgggcgtgcgc
gacctgtcggtgatcaacaccccgcccgaggatcgtcaatcgatcaagacctatctttcg
gcctttagccccggcggggtcagcgaggccgtggcccgcgagctggagcggggcgggcag
gtcttttttgtccacaaccgcgtgcaggatctggacaagatggccggcctggtgcgccgc
ctggccccccaggcccgggtggccatggcccacggccagatggccgaaaaggaactggaa
aaggtcatgctccagttcgtgcacaaggaagtggacgtcttggtctgcaccacgatcatc
gaatcgggcctggacatccccagcgccaacaccatcatcatcaacaacgccgacaagttc
ggcctcagccagatctaccagttgcgcggccgcgtgggccgcagcgcccagcgggcctac
gcctacctgttcatcaagtccgaggctgccctcagctccgatgcgcgcaagcgcctgaag
gccctgatggacttcacccaactgggctcggggttcgccatcgccatgcacgacatgcag
atccgcggcgcgggcaacatgctcggcgaggcccagagcggcatggccgccgaggtgggc
tacgagctttatctgggcatgctggaggacgccgtggcccggctcaagggcgaggccccc
agtgaaggccccgagcccgagatgaacctggccctgccagccagcctgcccgagggcttc
gtgcccgacgccgatgtgcgcctgtcgctctacaagcgcctgagcgccgcccgcggccag
gaggacgtggaggccatcggcgcggagttggccgatcgtttcggcccaccgcccagggcc
gtgagcaacctgctggagtcggtgtctttgaaggccctgctgcggcgcatgcacgccacg
cgcctggatctggccgccgaggcgctgacggtgcagttcacccagaccacggccctggac
ctggagcgcctgctggacatggcccaaagccagcccgacaagctgcgcgtcttccccgac
ggcaaggtccacctcaaactggagccggaccaggagcccatggccggggcgcggcggttc
ctggaacatattgcgcaggcgtga
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