Daucus carota (carrot): 108209114
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Entry
108209114 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108209114 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108209114
03015 mRNA surveillance pathway
108209114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209114
03041 Spliceosome [BR:
dcr03041
]
108209114
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108209114
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
108209114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
V-ATPase_G
Motif
Other DBs
NCBI-GeneID:
108209114
NCBI-ProteinID:
XP_017235348
LinkDB
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Position
2:complement(36001498..36009323)
Genome browser
AA seq
856 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAPELDNLVDITKVKMDVMKPWIANRATELL
GFEDEVLINFIYGLLEGKVVNGKEIQIQLTGFMEKNTGKFMKELWTLLLSAEKTASGVPQ
QFLDAKEEEVKKKKAESDWEIQELQKRKEKEAREREQEKMDKMDGKVDNFVRADNDALNT
TSRQRQPRDSSSRLSADEKEANGRNGFRGRIRGTPSRSNSGSFSNSRSRSDDRHRSRSIS
GPPSNRRSDSAEAVRRSPGGHSPPPDRRVSPQRSPRRRTSHYKERSISPLGRRSVSPIGR
QRRRSRSPVRRRSRSPLRRRSPVRYRSRSPIRRRSRSPIRRRSRSPLRHRSRSPVRRRSR
SPVRRRSRSPVRRRSRSPVRRRSRSPVRRRSPVRRLSRSPVRRLSRSPLRRLSRSPLRRR
SRSPIRRRSRSPIRRRSRSPIRRRRSPSPVQSRSPSPVRSRSASLSPVRRRSPLRRRRRS
SSSPSHMSPSPVQRKLPTQRRSATPVSLSSSPQELSPHSPVRQAPSLRRRRSPEHQRSPV
EPLQNRSRTQEQSSPVRRTTPREVAGRSPETGKGSTLESRAHTLSQRGRSGRNISHRGVL
SSSPPLYSSSGSESPPPSRMKSLSGDKSSPLVSPQREPVIRLSPPRKAKVHTNIPVSQKG
EEDMLSSESEDTKRKASGKKMTHLSTPDELKLSAPSRMARTVEERKSKGSDDSDYGATEK
LRAEGCEKRKHKKSKRQDSDDGNSSDSQLEGRKEAKKRRKEDKKLRREERRRRREERRRR
KEKRRAEKIKSKAGGTVSPPSDFQENQQGYTSDGGRASKRDSRFVDSEEQSEQKKLEIAL
REKAIETLRAKKGAGH
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgggttcttccggggcacgtcggccgatcaggacactcggttctccaacaag
caagctaagctcatgaagtcgcagaagtttgctcctgaattggataatttggtggatata
acgaaagtgaagatggatgttatgaagccatggattgctaatcgagccacggagctgctg
gggtttgaggatgaagtgcttattaattttatttatgggcttttggaagggaaggttgtt
aacgggaaggaaatacaaattcagttgacggggtttatggaaaagaatactggtaagttt
atgaaagagctttggaccctccttctcagtgcagagaagactgcaagtggtgttcctcaa
caatttttagatgcgaaagaagaggaagttaagaagaagaaggcggagtcagactgggaa
atacaagaacttcagaaaaggaaagagaaggaggctcgggaacgtgagcaggagaaaatg
gataagatggacggcaaggttgacaactttgtgagagctgataatgatgcattgaacaca
acctcgaggcagcgtcagcctagggactccagttcaaggctgtcagcagatgaaaaggag
gcaaatgggaggaacggttttaggggaagaatcagggggacaccttcaaggtcaaatagc
gggtctttttctaattctaggagtcgctcagatgacaggcacaggtctaggagcatatca
ggacctcctagcaacagacgttctgattctgctgaagctgtgcgtcgctctccagggggc
cactccccaccacctgatcgcagggtttcacctcagcgatctccaaggcgaagaacttct
cactataaggaaagatctatctcccctttaggtcgcagatcagtttcacctataggacgt
cagcggcgcagatcacgatctcctgtgcggcgcagatcacgatctcctttgcgacgcagg
tcaccagtgcgctacagatcacgttctcctattcgacgtcgttctcgttctcctattcgg
cgtcgttctcgttctcctttacgacatcgttctcgttcacctgtccggcgtcgttctcgt
tcacctgtccggcgtcgttctcgttctcctgtccgacgacgttctcgttctcctgttcgg
cgtcgttctcgttctcctgtcaggcgtcgttctcctgtccggcgtctgtctcgttctcct
gtccggcgtctatctcgttctcctctgcggcgtctgtctcgttcgccgctgcgacgtcgg
tctcgttcacctatccggcggcggtctcgttcgcctatccggcgtcggtctcgttcgcct
atccgacgtcgtaggtctccttctcctgtacagagccgatcaccttctcctgtaagaagt
cgatcagcttcactttcccctgtacgacgtcgatcccctttaagacgacgtcgaagatct
tcctccagtccaagtcacatgtctccttctccagttcagcgcaagctacctacccaaagg
agatcagcgactcctgtttctctgtcttcttcacctcaagagttgagtcctcattctcct
gttcgccaggctccgagtttacgacgtaggagatcaccggaacatcagagatcccctgtg
gaacctctgcaaaacagaagcagaacccaggagcagtcttctcctgttcgtcgaacaact
ccaagagaggttgctggacgttctcctgagacaggtaaaggaagcactttggagagccga
gctcatacattgtcccagagaggtcgaagtggtcggaatatctcgcatcgaggagtgttg
tcttcgtctcctccgctgtattcatcatctggctcagaatcacctccaccttctagaatg
aagagtcttagcggagacaagagtagtccgctcgtgagtcctcaaagggaaccagtcatc
agacttagtcctccgcggaaagcaaaagtgcatacaaatattcctgtaagtcaaaagggg
gaagaggatatgctttctagcgagtctgaagatacaaaaaggaaagcttctgggaaaaag
atgacgcatttatcaacacctgatgaacttaaactttcagctccgagcagaatggcgaga
acagttgaagagaggaagagtaaaggctcggatgattctgactatggtgctactgaaaag
cttagagctgaaggttgtgaaaagagaaagcacaaaaaatctaaaaggcaagactcagat
gacggtaatagctctgattctcaactagaagggaggaaggaggctaagaaaagaaggaag
gaggataaaaaactgcggagagaagagcgacgtaggcgacgggaggaacggcgtcgcaga
aaggagaaaaggcgtgcagaaaagataaaatcgaaagcagggggcactgtttctccaccc
tcagattttcaggaaaatcaacagggctacacttctgatggtggacgtgcatcgaaaagg
gattcacgctttgtagacagtgaagagcagtctgagcaaaagaaactagaaattgcactc
cgtgaaaaggctattgaaacgctcagagctaaaaagggcgctgggcattaa
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