Daucus carota (carrot): 108227338
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Entry
108227338 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108227338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227338
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108227338
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108227338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
OB_NTP_bind
R3H
HA2_C
Ank_2
HA2_N
ATPase
AAA_19
Ank_5
nSTAND3
AAA_22
ResIII
Ank
AAA_14
AAA_7
Ank_4
Rad17
T2SSE
PhoH
AAA_25
Motif
Other DBs
NCBI-GeneID:
108227338
NCBI-ProteinID:
XP_017257916
LinkDB
All DBs
Position
6:complement(2380186..2391365)
Genome browser
AA seq
1242 aa
AA seq
DB search
MMYSAGKRKKKQKGGGGGGGEMNNKNKKNDVNIAEATRIKIQTLLEDFRTSNHKAYTFEA
NLTNLERAAVHILCRKMGLRSKSSGRGDQRRVSVFKNKVKSGTMKKEKLPCFTFSEESQL
VLQDLFSRYPPDDHDIGEEKVKLGGNTEKLKRKKDDIFCRPDLSKADIKKKAESLASRVN
SVSTLKQITEKRSKLPIAAFKDVITSTIDSHQVVLISGETGCGKTTQVPQFILDHMWSKG
EACKIVCTQPRRISATSVAERISSERGENIGECVGYKIRLESKGGRHSSIVFCTNGVLLR
VLIAKGSDRLEKVSLRREKDDISNITHIIVDEIHERDRFSDFMLAIIRDMLPSYPNLRLV
LMSATLDAERFSQYFGGCPIIRVPGFTYPVKTFYLEDVLSFLKSSENNHLDSTSLCATDD
LESAEERKVAIDEAIDLAWSSDEFVPLLELVSCERGANLQHSMTGVTALMIYAGKGRVGD
LSMLLSFGADCHLRDNDGRTALEWAEQWNQDEAAEILKKHIEEGINNSKEENELLDKYFS
KANSELIDVVLIEKLLRKICSDSADGAILVFLPGWDDIKKTKEILETSNFFKDSYKFIIL
ALHSMVPSMEQKKVFNRPPPGCRKIILSTNIAETAITIDDVVYVLDCGRMKEKSYDPYNN
VSTLHSSWISKASAKQREGRAGRCQPGICYHLYSKLRAASLPAFQVPEIKRMPIEELCLQ
VKLLDPQCKIDEFLKKTLDPPVFESMRNAIIVLQDIGALTPDEKLTELGEKLGSLPVHPL
TSKMLFLAILLNCLDPALTLACASDYRDPFTLPMSPYDKKKAAAAKQELASLYGGHSDQL
ALIAAFECWKKAKERGQEARFCSNYYVSSGTMNMLFGMRKQLQSELHRNGFIPEDVSHCS
LNAHDPGILDAVLFAGLYPMVGKLLPQKGRRAIVETSGGEKVRLHPHSTNFKLSTRNLDD
QPLLIFDEVTRGDGGLHIRNCSVIGPLPLLLLATEIVVAPSKEDDEEDDDNDDDDDDEGS
ESEDADLDDVDDHIAEKHSKLEIEGEKMMSSPDNTVKLVVDRWLAFETTALDVAQIYCLR
ERLSAATLFKVREPRKTLPENFSASIYAISSVLSYDGRSGISETLDSVDKLTYMVSATEF
GQAEHGTNSKIHQPNNFLNSLIRPHDNSAHYYNGKGSGSRGVANRNGQLNYHIRQPPPSG
STNHYRGRAPQNFSRPASETGVQGEIGPGGDSLKRRHRTYRN
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattcagcggggaagagaaagaagaaacaaaagggaggcggaggcggaggtgga
gaaatgaataataagaataagaagaatgatgttaacattgcagaagctactcgaattaag
atacagactttacttgaggacttccgtacatctaatcacaaagcatacacatttgaggct
aatcttacaaatttagagcgtgctgcggtccatatattgtgcaggaaaatgggattgagg
tccaaaagctcggggcgtggtgatcaacggcgtgtttctgttttcaagaataaagtaaaa
tcgggtacaatgaaaaaggaaaaactgccttgctttacgttttcagaagagtcacagctg
gtgttacaggatctatttagtaggtatccaccggatgatcatgatatcggtgaagaaaag
gtcaaacttggtggaaacactgagaaattgaaacggaaaaaggatgatatattttgcaga
cctgatttgagcaaggccgatataaaaaagaaggcagaatcacttgcatctagagtgaat
agcgtctccacactaaaacagatcactgagaagagatcaaagcttcccattgcagccttc
aaagatgtcattacatcgacaattgattctcatcaggtagtactgatatctggtgaaaca
ggatgcggaaaaaccacacaggtcccacaatttattttggatcatatgtggagtaagggc
gaggcttgtaagatagtttgcactcaaccaaggagaatatcagcaacatcagttgcagaa
aggatttcttctgaaagaggtgaaaatataggggaatgtgttggttacaagataaggtta
gaaagcaaaggtgggaggcattcgtctattgtattttgcactaatggggtcctgttaagg
gtgctcattgctaaaggcagtgataggttggaaaaagtttctttaagaagggagaaggat
gacatttctaacataactcacattattgtggatgaaattcatgagcgtgaccgtttctca
gatttcatgctggcaattattagagacatgcttccatcttatcctaatttaaggctggtg
ttgatgagtgctacacttgatgctgaacggttttcacagtattttggtggctgtcctatc
ataagagtgcctggcttcacttatcctgtaaaaactttctacctagaggatgtactttct
ttcctaaaatcatccgaaaataatcacctcgattctacctcattatgtgcaactgatgac
ttggagtcggctgaggaacgtaaagtagccatagatgaagctattgatttggcttggtca
agtgacgagtttgttcctctccttgaattagtctcttgtgaaagaggtgcaaatcttcag
cattcaatgactggagtaactgcgttgatgatatatgctggaaaaggcagagtgggcgac
cttagcatgctcctctcatttggtgcggactgccatttacgagacaatgatggaagaaca
gcacttgagtgggctgaacaatggaatcaggacgaagctgctgaaattttgaaaaagcac
attgaagagggcattaataactcaaaggaagaaaatgagttacttgacaaatatttttcg
aaagccaattcggaactaattgatgttgtcctcatagagaaattgttgagaaaaatatgt
agcgactcagcagatggagcaatccttgtttttctcccagggtgggatgatataaagaaa
acaaaagagatactagagactagcaattttttcaaggattcgtataagtttatcatatta
gcacttcattctatggtcccttcgatggagcaaaagaaggttttcaacaggccacctcca
ggctgccgaaagatcattctttcaaccaatattgctgaaacagctatcaccattgatgat
gttgtttatgttttagactgtggtcggatgaaagagaaaagctatgacccgtataataat
gtatcaactcttcattcttcttggatttcaaaagccagtgcaaagcaacgtgagggacgt
gcaggacgttgtcagcctggtatctgctatcatctttattcaaaacttcgagcagcttca
ctaccagcttttcaagttcctgaaataaagcgaatgccaattgaggaactttgtttacag
gtaaagcttctggatccacaatgcaaaatagatgaatttttgaagaagacattggatcct
cctgtttttgaaagcatgcgtaatgcaattattgttctccaagatattggggccttgaca
cctgatgagaaacttactgagcttggggagaaattaggttctctaccagtgcatccccta
acaagcaagatgctctttttggccatattattgaactgccttgatcctgccttgacttta
gcttgtgcctcagattacagagatccgtttacacttcccatgtcaccttatgataagaaa
aaagccgcggccgctaaacaagagctggcatctttatatggtggacatagtgatcagcta
gcactaatagctgcatttgagtgctggaagaaggctaaggaaaggggtcaagaagcaagg
ttctgttctaattactatgtgtcttctggcaccatgaatatgctctttggaatgcgtaag
caacttcagtcagagttgcaccggaatgggtttattccagaagatgtttctcattgtagc
ctcaatgcacatgaccctggtatacttgatgctgttctttttgctggtttatatccaatg
gttgggaaactgcttccccaaaaaggaaggcgcgctattgtagagacttccggaggggag
aaggttcgactccaccctcattcaacaaactttaagttatcaacaagaaatttggatgac
cagccattactcatatttgatgaagtgacccgtggagatggcggcttgcatattaggaac
tgcagtgttattgggccacttccgttgctattgctagcaacagagattgtagtagctcct
agtaaggaggatgatgaagaggatgatgataatgatgatgatgatgatgatgaggggagt
gaatctgaagacgctgatctggacgacgttgatgatcatatagcagagaagcatagcaag
ttggaaatagaaggtgaaaaaatgatgtcctctcccgacaatacagttaaattggttgtt
gatcggtggctcgctttcgagacaactgctcttgatgttgctcaaatatactgtttgagg
gagagactatctgcagcaaccttgttcaaggtgagggagccacgtaaaacacttcctgaa
aactttagcgcctccatatatgcaatatctagtgttctatcttatgatggacgctcaggg
atctcagaaacactggattctgtagacaaactaacttatatggtgagtgcaaccgaattt
ggccaagcagaacatggcacaaacagtaagattcatcagccaaacaattttctgaattca
cttattcgcccacacgacaactctgcacattattacaatggcaagggatctggttctaga
ggggtggccaatagaaatgggcagttaaattatcacattcggcaaccacctccttcagga
tcaacaaatcattatagaggcagggctccccaaaactttagtcgacctgcttctgagacg
ggagtgcagggtgaaatcggtcctggtggggattccttaaagcgacgtcatcgcacttac
agaaattaa
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