Dictyostelium discoideum (cellular slime mold): DDB_G0279169
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Entry
DDB_G0279169 CDS
T00245
Symbol
vps39
Name
(RefSeq) citron-like domain-containing protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
DDB_G0279169 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ddi04131
]
DDB_G0279169 (vps39)
Membrane trafficking [BR:
ddi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
DDB_G0279169 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
CNH
Vps39_1
Clathrin
Motif
Other DBs
NCBI-GeneID:
8621905
NCBI-ProteinID:
XP_001732990
dictyBase:
DDB_G0279169
UniProt:
B0G127
LinkDB
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Position
3:complement(1722504..1725233)
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AA seq
851 aa
AA seq
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MNKVDMNAFVSQNLFDKFPQRIECIEQWEYKGKKHLFIGTTEGHVLVYDVIEKENQHGNI
QVSVIIRDTKLVSKKPITQMSIFDDYNKLLVLTDGDLKVYDLIQFDVTTGITLMKAKGCS
TYAVSYQPGSLSLVAAVKKKLVLYGWDGSDFYELKEFNMPDIAKHIDYRGNFIIVCFKKV
YNIINTQDGSVINVDADKLTFTTFLQENEFLMVKGSMSFFINTAGNPVRRHSITWQDAPS
SMSIYQPFAISIEPRLVEVQILPDPNDPKTISQSLFLPACKSISAKRDIYVSSATSIWRL
QPLPILDLVDQMVTKQEYETAINLLQTSKDIIPGIKERLIKIKTSAAYHLFSKEQFQAAM
GYFISAQVDPLKIISLYPGLLPAHLQDKLSTPFNIRDIENNPRALPELEHYLVEFRKNKI
EYSSPPELLNSGYTLQELVDTTLLKVYIKHKASLIPHFFHLKNHCHIEESERVLLEEKKL
TELILFYKSKDLHRKALTLLAKSSNISPNDTISYLSQLGEKHIGIILEHSKWVLQKCPED
ALKIFTVDRKDPLSPDDVIPHLKQCAPSLLRPYLEHIINDPISPNKNPEYHNQLVFEYLG
SILELIKQTPNSAIVREPGLIPAGKESGELGELRTKIIQFLENSKYYLPEKMLSRFPSND
LYEERAILLSKIGRHEQALAIYAHKLKNFAMAEEYCDRHYNKDSEESRDVYLSLLNVYLK
PTDANTSPLLDPALKLLNKHYRSINTPKALSLLPLNTPIDQLYPFFESVIRDNTKTKRDN
QIVKNLFKSENFKIKDELSQLKTGVIKITEDLTCPICNKIFLGTQAFVARPDGTALHYHH
KNDKQHQSWFE
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagttgatatgaacgcttttgtatcacaaaatctattcgacaaatttccacaa
agaatagaatgtattgaacaatgggaatataaaggaaagaaacatttattcattggaact
acagaaggtcatgttttagtatatgatgttattgaaaaagagaatcaacatggtaatatt
caagtttcagttataattagagatacaaaattagtatcaaaaaaaccaattacacaaatg
agtatatttgatgattataataaattattagtattaacagatggtgatttaaaggtatat
gatttgattcaatttgatgtaacaacaggaataacattaatgaaagcaaaaggatgtagt
acatatgcagttagttatcaacctggttcattaagtttagtagcagcagttaaaaagaaa
ttagtattatatggttgggatggttcagatttctatgaattaaaagaattcaatatgcca
gacatagcaaaacatatcgattatcgtggtaatttcattatagtttgttttaaaaaagtt
tataatatcataaatactcaagatgggtcagttataaatgttgacgctgataaattaact
tttacaacatttttacaagaaaatgaatttttaatggttaaaggaagtatgtcatttttt
ataaatacagctggtaatccagttagaagacattctataacatggcaagatgcaccaagt
tcaatgtcaatttatcaaccatttgcaattagtatagaaccaagattagttgaagttcaa
attttaccggatccaaatgatccaaagacaatatcacaatcgttgtttttaccagcatgc
aaatcgattagtgccaagagggatatatatgtttcatcagcaacgagtatttggagatta
caaccattgccaatattagatttggtggatcaaatggtgacgaaacaagagtatgagaca
gcaattaatttattacaaacttcaaaagatattataccaggaattaaggagagattgata
aagattaaaacatcggcagcctatcatctcttttcaaaggaacaatttcaagctgcaatg
ggttattttataagtgcacaagttgatccattgaaaatcatttcattgtatcctggcttg
ctaccagcacatttacaggataaactatcaacaccattcaacatacgtgatattgaaaac
aatccaagagcattaccagagttggagcattacttggtcgaatttagaaagaataaaatc
gaatattcatcaccacccgaactattaaactctggctatacattacaagagttggtggat
actacacttttaaaggtttatattaagcacaaggcgtctttgattccccactttttccat
ctcaagaatcattgccacattgaagagtcggaacgtgtgttattggaagagaagaagttg
acagaactaattctattttataaatcaaaggatcttcacagaaaggcattgacactattg
gcaaagagtagtaatatatcaccaaacgataccatttcctatctctcacaattgggtgaa
aaacatattggcatcattttagagcattccaaatgggtgttacaaaagtgtccagaggat
gctttaaagattttcacagtcgatagaaaggatccactctcaccagatgatgtaattcca
catttgaaacaatgtgcaccctcattgttacgtccttacttggagcatatcatcaatgat
ccaatctcaccaaataagaatccagaatatcacaatcaattggttttcgaatatttaggc
tcaatattggaattaattaaacaaacaccaaactctgcaattgtacgtgaacctggttta
ataccagccggtaaggagagtggcgagttgggtgaacttagaacaaagatcattcaattc
ttggaaaactcaaaatactatttaccagagaaaatgttgtcacgtttcccttcgaatgat
ctctacgaagagagagctatcctattaagtaaaattggtcgtcacgagcaagcattggca
atctatgctcacaagttaaaaaatttcgccatggcagaggaatattgcgatcgtcattac
aataaggactctgaagagagtagagatgtttatttatcattgttaaatgtttatttaaaa
ccaaccgatgcaaatacatctccactattagatcccgctttaaaacttttaaacaaacat
tatcgttcaatcaatactccaaaagcattgtcacttttacctttaaatactccaatcgat
caactctatcctttctttgaatcggtcattagagataataccaaaaccaaaagagataat
caaatcgtaaaaaatcttttcaaatctgaaaactttaaaatcaaagatgaactttctcaa
cttaaaactggtgtcattaaaatcactgaagatttaacttgtccaatttgtaataaaata
tttttaggtactcaggcttttgttgctcgtcccgatggtactgctttacattatcatcat
aaaaatgataaacaacatcaaagttggttcgaataa
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