Dictyostelium discoideum (cellular slime mold): DDB_G0293558
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Entry
DDB_G0293558 CDS
T00245
Symbol
pabpc1A
Name
(RefSeq) RNA recognition motif-containing protein RRM
KO
K13126
polyadenylate-binding protein
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03015
mRNA surveillance pathway
ddi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DDB_G0293558 (pabpc1A)
09123 Folding, sorting and degradation
03018 RNA degradation
DDB_G0293558 (pabpc1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0293558 (pabpc1A)
03041 Spliceosome [BR:
ddi03041
]
DDB_G0293558 (pabpc1A)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
DDB_G0293558 (pabpc1A)
mRNA cycle factors
Stress granule specific factors
DDB_G0293558 (pabpc1A)
Spliceosome [BR:
ddi03041
]
Complex C
Other components
Complex C specific factors
DDB_G0293558 (pabpc1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
Nup35_RRM
RRM_3
RRM_occluded
RRM_7
OB_RNB
Motif
Other DBs
NCBI-GeneID:
8629291
NCBI-ProteinID:
XP_629007
dictyBase:
DDB_G0293558
UniProt:
Q54BM2
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All DBs
Position
6:3041877..3044187
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AA seq
565 aa
AA seq
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MATNFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYN
GADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSA
FGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERG
QPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEA
AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKL
REVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALA
QRKDIRRAQLEMQHQQKFKTGIRQQMPPTYGSGPVFFTPAPVNPQVVYQQMMPRPRNWNG
QPVGVPQGQYANMNYARGQPRQNGPRQNGGQPRQNGPRPDVSGAQPIPVQQQTTLDVAQT
QQAASSAESALNLQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEE
LFTLTQRQDLLADKIREALEVLGSN
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaacttcactccaatttcatcttcactctatgttggtgatttattaccagaa
gtttcagaacaacatttatttgaaattttcaatcaagttggtttagtatcaaacattaga
gtttgtcgtgataccaatactcgtcgttcattaagttatgcatacgttaactactataat
ggtgcagatgctgaacgtgcattggataccttaaacaataccccaatcagaggtaaggcc
tgtcgtattatgtggagtcaacgtgatccatcacttcgtaaatcaggtgttggtaatgtt
ttcatcaagaacctcgacaaaggtattgatcataaagcattatatgatacctttagtgct
tttggtaacattttatcatgcaaagttgtcactgacgatggtaacagtagcaaaggtttt
ggtttcgttcactatgaaacccaagaatctgccgataaagctattgccaaagtcaatggt
atgatgattaacggacaaaaggttttcgtcggtccattcaaatcctcaaaggaacgtggt
caaccaaccgaagttaaattcaccaatgtcttcttcaagaatctctctgaagatgtaggt
ccagatcaattgaaagaactcctccaacaatatggtgaaattaccaacatcaccataatg
gccgacgataagggtaagagtaaaggttttggtttcgccaactttgaatcagccgaagct
gcaaagaacgtcgttgaaaacgaaaatggtaaaatcttccatggtaaaccaatctatgct
ggtcgtgcccaaaagaagattgaacgtgaagctgaactcaaacacacttttgaaaccaaa
tatcaaggtgtcaatctctacatcaaaaacattgacgactctatcgacaatgataaactc
cgtgaagttttctctcaattcggtaccataacctctgctatcgttatgaaagacgacaaa
gccaccaccagcaaaggttttggtttcgtttgttacaccgcaccagatgaggccactcgt
gccgtcaccgaaatgaacggtcgtatgattggtaccaagccattgtacgttgctttagct
caacgtaaagatattcgtcgtgctcaactcgaaatgcaacaccaacaaaaattcaaaact
ggtatccgtcaacaaatgccaccaacctacggtagtggtccagttttcttcactccagcc
ccagtcaacccacaagttgtctaccaacaaatgatgccacgtccacgtaactggaacggt
caaccagtaggtgtcccacaaggtcaatacgccaatatgaactatgcccgtggtcaacca
cgtcaaaatggtccacgtcaaaacggtggtcaaccacgtcaaaacggtccacgtccagac
gtttcaggtgctcaaccaattccagttcaacaacaaaccactttggatgtcgctcaaact
caacaagccgcctcatcagctgaatctgctcttaacctccaatcaatcatcaatctccca
tctcgtgatcaacaaaacgttgctctcggtgaacacctctacccattaatccacaactct
caaccagatttggccggtaaaatcacaggtatgctcttagactctttaccagttgaagaa
ttattcacccttactcaacgtcaagacttgttagccgataaaatcagagaagcccttgaa
gttttaggttcaaactaa
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