Dickeya dianthicola: DDI_3346
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Entry
DDI_3346 CDS
T05141
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDI_3346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddq03019
]
DDI_3346
03016 Transfer RNA biogenesis [BR:
ddq03016
]
DDI_3346
Enzymes [BR:
ddq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DDI_3346
Messenger RNA biogenesis [BR:
ddq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DDI_3346
Transfer RNA biogenesis [BR:
ddq03016
]
Prokaryotic type
tRNA degradation factors
DDI_3346
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
HTH_12
S1
TFIIE_beta
Rho_RNA_bind
RNase_II_C_S1
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
ATO34514
LinkDB
All DBs
Position
complement(3464476..3466953)
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AA seq
825 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREYILEHLAKRDTPISREELATDLQLTSDEQLEALRRRLR
AMERDGQLVFTRRQCYALPEKLDLLRGTVLGHRDGYGFLRVEGRKDDLYLSAEQMKTVIH
GDVVLAQPLGEDRRGRREGRIVRILEPRTNQIVGRYFTEAGTGFVVPDDSRLSFDILIPS
EFIAGARMGSVVVVELTQRATRRTKAIGKIVEILGDNMGTGLAVDIALRTHEIPHSWPPK
VEEQVSDLADEVPEDAKKGRIDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
TQGKLSGYTFYEAVMSSHARLTYTKVWSILQGDEALREHYQPLVAPLEELHQMYKVLDHA
REVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAAKFVEKNEEP
ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNSIAGRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDRKARWTHSGGWH
ADFNEMLQLGEHCSMTERRADEATRDVADWLKCDFMQDHVGEAFTGIISSVTGFGFFVRL
NDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESRGQVYRLGDEVQIRVEAVHMDERKIDFA
LLSSTRKVRGEGKTARDRVKKGAASDAKPPRRRRTGQRANVEPDSAFRPDGDGKRQSAGK
GKDKAKAGGGKKTEKSQKNAEKTRKIAAATRAKRASKKKKPAEPA
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccgtttctggaacgtgaagcagaaaaatatgaatcccccatccctagc
cgcgagtacattcttgagcatctggcaaaacgggatacgcccatcagccgtgaggaactg
gccaccgacctgcaactgaccagtgacgaacaactggaagcgttgcgccgacggctgcgc
gctatggagcgcgacgggcagttggtgttcacccgccgccagtgttatgcactgccggaa
aagctggatctgctacgcggcacggtgctcggccaccgcgatggctacggtttcctgcgg
gtggaagggcgtaaagacgatctttacctctccgccgaacagatgaaaacggtgattcat
ggcgatgtggtgctggcccagccgttaggcgaagaccgcagagggcgccgcgaagggcgc
atcgtgcgtattctggagccccgcaccaatcagatcgtcgggcgttacttcaccgaggcc
ggcaccggtttcgtggtgccggacgacagccggctgagcttcgacatcctgatcccgtcg
gaatttatcgccggcgcccgcatggggtcggtggtagtggtggaactgacccagcgcgcc
actcgccgcaccaaggctatcggcaagatagtggagatcctcggcgacaacatgggcacc
gggctggcggtggatatcgcgctgcgtacccatgaaattccgcacagttggccgcccaag
gtggaagagcaggtgagcgacctggcggatgaggtgccggaagacgccaagaaaggccgg
atagatctgcgttctttgccgctggtcaccatcgacggcgaagacgcgcgcgattttgac
gatgccgtgtactgtgagaagaaacgcggcggcggctggcggctgtgggtggcgattgcc
gacgtcagctactatgttcgtcccggcacggcgctggaccatgaagcccgcgcgcgcggc
acctcggtctacttcccgtcgcaggtggtgccgatgctgccggaagtgctttccaacggg
ctgtgttcgctcaacccgcaggtggatcgcctgtgtatggtgtgcgaaatgacggtttcc
acccaggggaaactgtccggctatacattctatgaggcggtaatgagttcgcatgcccgc
ctcacctataccaaggtgtggagcattctgcagggcgacgaggcgctgcgcgagcattac
caaccgctggtggcgccgctggaagaactgcaccagatgtacaaggtgctggatcatgcc
cgtgaggtgcgcggcggcatcgctttcgaaaccgaagaagccaaattcatcttcaacgcc
gaacgccgcatcgagcgggtggaagcggtggtgcgcaacgatgcgcacaagctgattgaa
gaatgcatgattctggccaacatctcggcggcgaagtttgtcgagaagaacgaagaaccg
gcgctgttccgcgtgcatgaccagcccagcgaggaccatgtgctggcgctgcgcagcgtg
ctcggcgaactggggctgacgctgaaaggcggtatgaagccgcagccgaaagattatgcc
gaactgatgaattccatcgccggccggccggatcacgagatgctgcaaaccatgctgctg
cgctcgatgaaacaggcggtgtacgacccggaaaaccgcggtcatttcggtctggcgctg
acctcgtacgggcatttcacctcgccgattcggcgttatccggatctgtcgctgcaccgc
gccatcaagtacctgctcagcgaccgtaaagcccgctggactcacagcggcggctggcac
gcggatttcaacgaaatgctgcaactgggcgagcactgttcgatgaccgagcgccgggcc
gatgaagccacgcgcgacgtagccgactggctgaagtgcgactttatgcaggatcatgtc
ggtgaagcctttaccggtattatctccagcgtcaccggcttcggtttcttcgtgcgcctc
aacgacctgtttatcgacggtctggttcacgtttccacgctggataacgactactatcgt
tatgacaatgtcggccagcgtttgatcggcgaatcccgcggtcaggtgtatcgactgggc
gacgaagtgcagatccgcgttgaagcggtacacatggacgagcgtaagatcgatttcgct
ctgctgtcttccacccgcaaggtgcgcggcgaaggcaaaaccgcacgcgatcgggtgaag
aaaggcgccgccagcgacgcaaaaccgccgcgtcggcgccgtaccggccaacgcgccaac
gttgagccggacagcgcatttcgccccgacggcgacggcaagcgccagtctgccggcaaa
ggcaaggacaaagccaaagccggcggcgggaagaagacggaaaaatcgcaaaagaacgct
gaaaaaacgcgtaaaattgcggctgctacccgcgccaaacgcgccagcaaaaagaagaag
ccggcggagcccgcctga
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