Dickeya dianthicola: DDI_3471
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Entry
DDI_3471 CDS
T05141
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ddq
Dickeya dianthicola
Pathway
ddq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DDI_3471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddq03400
]
DDI_3471
DNA repair and recombination proteins [BR:
ddq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDI_3471
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DDI_3471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_23
DnaJ_CXXCXGXG
AAA_25
NACHT
nSTAND3
Viral_helicase1
cobW
BCA_ABC_TP_C
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
ATO34639
LinkDB
All DBs
Position
complement(3572363..3575194)
Genome browser
AA seq
943 aa
AA seq
DB search
MDKIEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PEHAIPLDAQTVSQMVDNVLSQPEGKRLMLLAPIVKERKGEHTKTLENLATQGYIRARID
GEVCDLSDPPKLELQKKHTIDVVVDRFKVRNDLAQRLAESFETALELSGGTAVVADMDDP
NAPELLFSANFACPVCGYSMHELEPRLFSFNNPAGACPTCDGLGVQQFFDPARVVQNGEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYQFDVEAPFDNLSPAVQKVILYGSGKENIEFKY
INDRGDTSVRRHPFEGVLNNMERRYKETESTAVREELAKFISNRPCASCNGTRLREEARH
VYVEQTTLPQIADMSIGHAMAFFHNIKLSGQRAKIAEKVLKEIGDRLRFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHIIDIGPGAGVHGGQVIAEGTAAQIMAEPESLTGQFLSGARKIEI
PTQRIPADPGKVLKLIGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
QLNGGELNEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
ARSRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKSKRYNRETLEIKY
KGKSIHEVLEMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLTVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAQCEKSHTARFLKPILERG
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaaattcgtggtgcccgtacccataacctgaagaatatcaacctgatt
attccacgcgataaactgatcgtcgtgacggggttatccggttctggcaaatcctcgctg
gcgttcgatacgctgtatgccgaagggcagcgtcgttatgtggagtcgctgtcggcctat
gcccgtcagttcctgtcgctgatggaaaagccggatgtggatcacatcgaagggttatcg
cccgccatttccatcgagcagaaatctacctcgcacaacccgcgttccaccgtcggcacc
atcaccgaaatccacgattatctccgtctgctgttcgcccgcgtcggcgagccgcgctgc
ccggagcacgctattccacttgatgcccagaccgtcagccagatggtggacaacgtgttg
tcgcagccggaaggcaaacggctgatgctgttggcgccgatcgtgaaagaacgtaagggc
gagcacaccaagacgctggaaaacctggcgacgcagggctacatccgcgcccgtatcgac
ggcgaagtgtgtgacctgtcggacccgccgaaactggaattgcagaaaaagcacaccatc
gacgtggtggtggaccgttttaaagtgcgcaacgatttggcgcagcgtctggccgagtcg
ttcgaaaccgcgctggaactgtccggcggcaccgccgtggtggcggacatggacgacccg
aacgcgccggagctgctgttctccgccaactttgcctgcccggtgtgcggctatagcatg
catgagctggagcccaggctgttttcgttcaataacccggctggcgcctgcccgacctgc
gacgggcttggcgtacagcagtttttcgacccggcgcgcgtggtgcaaaacggcgagctg
tcgctggccggcggcgccattcgtggttgggatcgccgcaacttctactatttccagatg
ctgcgctcgctggcggagcattaccaattcgacgttgaagcgccgttcgataaccttagc
ccggcggttcagaaggtgattctgtacggttccggcaaggaaaatatcgagttcaagtac
atcaacgatcgcggcgatacctcggtgcgccgccatccgttcgaaggggtgctcaacaat
atggagcgccgctacaaagaaaccgaatcgaccgcggtgcgcgaggaactggcgaagttc
atcagcaaccggccgtgcgccagctgcaacggcacccgcctgcgtgaagaggcgcgccac
gtttatgtggaacagaccacgctgccgcaaattgccgacatgagcatcggccacgcgatg
gcgttttttcataacattaaactgagcggccagcgggcgaaaatcgccgaaaaagtgctg
aaagagattggtgaccggctgcgctttctggttaacgtcggcctgaattacctgtcgctg
tcgcgctcggcggagacgttgtccggcggcgaggcgcagcgtattcgtctggccagccag
atcggcgccggtctggtcggtgtgatgtacgtgctggacgaaccgtccatcggtctgcac
cagcgcgacaacgagcgcctgctggagacgctgatccacctgcgtaacctcggcaacacg
gtgattgtggtggaacacgatgaagacgccatccgcgccgccgatcatatcatcgacatc
ggccccggcgcgggcgttcacggcgggcaggtgatcgccgaagggaccgccgcgcagatc
atggcggagccggaatcactgaccggtcagttcctgagcggcgcgcgcaaaatcgagatc
ccgacgcagcgcataccggcggatccgggtaaagtccttaagctgattggcgcacgcggc
aacaacctgaaagacgttaccctgacgctgccggtcgggctgttcacctgcattaccggg
gtgtccggctccggtaaatcaacgctgatcaacgacacgctgttcccgatcgcccagcgc
cagcttaatggcggcgagctgaacgaaccggcggcgtaccgcgacattcaggggctggag
catttcgacaaagtgatcgatatcgatcaaagcccgatcggccgtacgccgcgctccaac
ccagccacctacaccggcgtgttcacgccgatccgcgagttgttcgccggcgtgccggaa
gcgcgcagccgtggttataaccccggccgtttcagctttaacgtgcgcggtgggcgttgc
gaagcctgtcagggcgatggcgttatcaaggtggaaatgcacttcctgccggatatttac
gtgccctgcgatcagtgcaaaagcaaacgctataaccgcgagacgctggagattaaatac
aagggcaagagcatccacgaagtgctggagatgactatcgaggaagcacgcgagttcttc
gacgccatcccggcgctggcgcgtaaactacaaacgctgatcgatgtcggtttgtcctac
atccggctggggcagtccgccaccaccttgtccggcggcgaggcgcagcgcgtgaaactg
gcgcgtgagctgtcgaaacgcggcaccgggcagacgctctatattctggacgaacccacc
accggcctgcatttcgccgatattcaacaactgctgacggtactgcatcaactgcgcgat
cagggcaacaccattgtggtgatcgaacacaatttggacgtgattaagactgcggactgg
atcgtcgatctggggccggaaggtggtagcggcggcggcgagattctggtttccggcacg
ccggaaacggtggcgcagtgcgagaaatcccacaccgcccgtttcctgaaaccgattctg
gaacgcggctaa
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