Denitrobacterium detoxificans: AAY81_02210
Help
Entry
AAY81_02210 CDS
T04382
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ddt
Denitrobacterium detoxificans
Pathway
ddt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AAY81_02210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddt03021
]
AAY81_02210
03400 DNA repair and recombination proteins [BR:
ddt03400
]
AAY81_02210
Enzymes [BR:
ddt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AAY81_02210
Transcription machinery [BR:
ddt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AAY81_02210
DNA repair and recombination proteins [BR:
ddt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AAY81_02210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_A_CTD
HHH_5
PFam54_60
Motif
Other DBs
NCBI-ProteinID:
ANE22156
UniProt:
A0A172RWQ7
LinkDB
All DBs
Position
546183..550589
Genome browser
AA seq
1468 aa
AA seq
DB search
MTEYDVNNFDALRISLASAKDIRVWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW
ECACGKYKRIRFKGIVCERCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGSPSRLGYLL
DIPPKDLEKVLYFASAIVTSVDKEAREADEADLRDELEADLDELDAERDRLVEATRRLST
DYVPEEDDIIDDIDDDERMTPEEIEDELADIYEEFNERKALRSEAFEAFMKIEPKQLVPD
EALYREMRLNYSDYFKGGMGAEAVRDLLDGMDLESVAEELAEVIATGKGQKRAKAVKRLK
VVDAFLKSDNNPSDMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL
LDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNL
LGKRVDYSGRSVIVVGPELKLHQCGLPSQMALELFKPFVMKRLVELEYAANIKAAKRAVD
RHASYVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPVLVNGKAIKLHPLVCTAFNADFD
GDQMAVHVPLSSAAQAEARVLMLSANNIKSPAHGRPLTIPTQDMIIGLYYLTAARDNFPG
EGRIFASFADARHAYDAHADVDLQAKIVVRLDRDTEVAEKFGEPVLRKAGERIQTTIGRI
TINAVLPDDYPFLNYELNKSEVSRLIEDCCRRYTTSEMEPILDGLKANGFHYATRAGLTV
SVYDATVPPNKGEILAKADEEVARIDEDYEMGLVSDEERHKQVVDIWTDANEAVGDAMAK
NFDHFNPIYMMAFSGARGNIKQIRQLAGMRGLMSDPKGEIIDQPIKSNFREGLSVLEYFV
SSHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREIDCGTHEGVPYPLHNAKGELDEN
LIGRCLAVAAVNENGEVIMEADEYINGMEDMKNLVASGVNEVTIRTIMTCHAEHGVCQKC
YGWDLATGRPVNIGTAVGIIAAQSIGEPGTQLTMRTFHSGGVAGDDITHGLPRVTELFEA
RKPKGQAVLAEIAGTMQVRGDKQTKTITIHDQDGNIREYVVSARAQLMPGLNDGDEVVVG
QQLTRGSVNPHDLLRLTDPNTTLRYIVSQVQDVYVSQGVDINDKHIEVIARQMLRKVAVL
DAGDSDYLPGRQVNRYEFEGVANKLVLEGKEPPTGQPLLLGITKASLATDSWMSAASFQE
TTKVLTDAAIEGKTDNLVGLKENVIIGKPIPAGTGLKRYRNVGLTYKGRPVHMGGTDTLP
EYAPDELRTTEELLPQPQDWSLDGDSYLNMGGSYSSYFNSLGASRTKQLSDEEARLYIYD
DLGVSQRWANKFSEAGIETVADLVGYTEDDLMRIEGIGAKAIEELKTGLEAHNLLRVIED
DLVASSDDMSQLLDMVFSPDDTILIGGDQPATFNTEGEDMLGEALPPRSYQRNLEELDAL
LGGIGDLNLHMGESEESDDAQDAQDDAE
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgactgagtacgatgtgaacaacttcgacgcactgcgtatctccctggctagcgcgaag
gacattcgcgtatggtcccacggcgaagtgaagaagccggaaaccatcaactaccgtacc
ctgaagcccgaaaaggacggcctgttctgcgagcgcatctttggtcccacgaaggactgg
gagtgcgcctgcggtaagtacaagcgcatccgcttcaagggcatcgtgtgcgagcgctgc
ggcgttgaagtcacccgcagcaaggttcgccgcgagcgcatgggccacatcgagctcgct
gctcccgtgagccatatctggtacttcaagggcagccccagccgcctgggctacctgctc
gatattcctccgaaagacctggagaaggtgctctactttgcgagcgccatcgtaaccagc
gtcgacaaggaagcacgcgaggccgacgaagccgacctgcgcgacgagcttgaagccgat
cttgacgagctggatgccgagcgcgatcgcctggtagaggccacccgtcgcctctccacc
gactacgtgcccgaagaagacgacatcatcgacgacatcgatgacgacgagcgcatgacc
cccgaggaaatcgaggacgagctcgccgacatctatgaggagttcaacgagcgcaaggct
ctgcgttcggaagccttcgaggccttcatgaagatcgagcccaagcagctcgttcccgac
gaggctctgtatcgcgagatgcgcctgaactacagcgattacttcaagggcggcatgggc
gccgaagccgtgcgcgacctgctcgatggcatggatctggaatccgtggccgaagagctc
gctgaagtcattgccacgggcaaggggcagaagcgcgccaaggccgtgaagcgcctgaag
gtcgttgacgccttcctgaagagcgacaacaaccccagcgacatgatcctcgacgttatc
cccgtcattccgcccgatctgcgccccatggtgcagctcgacggtggccgcttcgctacg
agcgacctgaatgacctgtatcgtcgcgtcatcaaccgtaacaaccgcctgaagcgtctg
ctcgacctcggtgcccccgagatcatcgtgaacaacgagaagcgcatgctccaggaagcc
gtcgacagcctgttcgacaacggccgtcgtggtcgccccgtcacgggccccggcaaccgt
ccgctgaagagtctctccgacatgctgaagggcaagcagggccgcttccgccagaacctg
ctgggtaagcgcgtcgactactctggccgttccgttatcgtcgttggccctgagctgaag
ctgcatcagtgcggcctgcccagccagatggctctggagctcttcaagcccttcgtaatg
aagcgcctggtcgagcttgagtacgctgccaatatcaaggctgcaaagcgtgctgtcgat
cgtcatgccagctacgtgtgggacgtgctcgaagaggtcatcaccgagcatcccgtgctg
ctgaaccgcgcacctaccctgcatcgtctgggcatccaggcgttcgagccggtgctggtg
aacggcaaggccatcaagctgcatccgctcgtatgtacggcattcaatgccgacttcgac
ggtgaccagatggctgtgcatgtgcccctgtcctctgccgcccaggccgaggcccgcgtg
ctcatgctttccgccaacaacatcaagtcgcctgctcatggtcgtccgctgacgattccc
acgcaggacatgattatcggcctgtactacctcacggccgcccgcgacaacttccccggc
gagggtcgcatcttcgcaagctttgccgacgcccgtcatgcatacgatgcgcatgccgac
gtcgacctgcaggccaagatcgtcgtgcgtctcgaccgcgacaccgaagttgccgagaag
tttggcgagcccgtgctgcgcaaggcaggcgagcgcatccagaccaccatcggccgcatc
acgatcaacgccgtgctgcccgacgactatccgttcctcaactacgagctgaacaagtcc
gaggttagccgcctgatcgaggactgctgccgtcgctacaccaccagcgagatggagccc
atcctggacggtctgaaggccaacggcttccactacgctacgcgcgctggtcttaccgtt
tcggtttacgacgccacggtgccgcccaacaagggcgagatcctggccaaggccgacgag
gaagtcgctcgcatcgacgaagactacgagatgggcctggtaagcgacgaagagcgtcac
aagcaggtcgtcgatatctggaccgatgccaatgaggccgtcggcgatgccatggcgaag
aacttcgaccacttcaaccccatctacatgatggcgttctctggtgctcgtggtaacatc
aagcagattcgtcagctggctggtatgcgtggccttatgtccgacccgaagggcgagatt
atcgaccagcccattaagtcgaacttccgcgagggcctgtccgtattggaatacttcgtt
tcctcgcacggtgcccgtaagggtctggccgacaccgcactgcgtacggctgactctggt
tacctcacccgtcgtctggtcgacgttgcccaggacgttattgttcgcgaaatcgactgc
ggcacgcacgagggcgttccctatccgctgcataatgcgaagggcgaactcgacgagaac
ctcatcggtcgctgcctggccgttgctgccgtaaatgaaaacggcgaagtcatcatggag
gccgacgaatacatcaacggcatggaggacatgaagaacctcgttgcctccggtgtgaac
gaagtcaccatccgcaccatcatgacctgccatgccgagcatggcgtgtgccagaagtgc
tacggttgggacctcgcaacgggtcgccccgtcaacatcggcacggccgttggtattatc
gccgctcagtccattggcgagcctggtacgcagcttacgatgcgtacgttccactccggt
ggcgttgctggtgacgacatcacgcacggtcttccccgtgttacggagcttttcgaagcc
cgtaagcccaagggccaggctgtgctcgccgaaattgccggcaccatgcaggttcgtggc
gacaagcagacgaagacgatcaccattcacgaccaggatggcaacatccgcgagtacgtg
gtatccgctcgcgcccagctcatgccgggcctgaacgacggtgacgaagtcgtggttggc
cagcagctcacccgcggttccgtgaacccgcacgacctgctccgcctcaccgacccgaac
accacgctgcgctacatcgtgtctcaggtccaggacgtatacgtgtcccagggcgtagac
atcaacgacaagcacatcgaggttatcgcacgtcagatgctgcgtaaggttgccgtgctc
gacgctggcgattccgactacctgccgggccgccaggtcaaccgctacgagttcgagggc
gttgccaacaagctcgtactggaaggcaaggagcctcctacgggtcagccgctgctgttg
ggcatcacgaaggcctcgctggccaccgattcgtggatgtcggccgcatcgttccaggag
accaccaaggttcttaccgacgctgccatcgaaggcaagacggacaacctggttggcctg
aaggagaacgtcatcatcggcaagcccatcccggctggtacgggtctgaagcgctatcgc
aacgtgggccttacctacaagggtcgcccggttcacatgggtggcaccgacacgctgccc
gagtacgctcccgacgagctgcgtaccaccgaggaactgctcccgcagcctcaggattgg
tcgctcgacggcgacagctacctgaacatgggtggtagctactccagctacttcaacagc
ctgggtgctagccgcaccaagcagctgtccgacgaggaagcgcgcctgtacatctacgac
gatctgggcgtgtcgcagcgttgggccaacaagttcagcgaagcgggcatcgagacggtt
gccgacctggttggctacaccgaagacgacctcatgcgcatcgagggtattggcgccaag
gccatcgaagagctgaagacgggcctggaagcccacaacctgctgcgcgtcatcgaagac
gacctggttgcctccagcgacgacatgagccagctgctcgacatggtgttctcgcccgac
gacaccatcctcatcggcggcgatcagcctgccaccttcaacaccgaaggcgaggatatg
ctgggcgaggctctgcctccgcgctcttaccagcgcaacctggaagagctcgacgctctg
ctgggcggcatcggcgatctgaacctgcacatgggcgagtccgaagaatcggatgacgct
caggatgcgcaggacgacgcggaataa
DBGET
integrated database retrieval system
