KEGG   Devosia ginsengisoli: FPZ08_07895
Entry
FPZ08_07895       CDS       T06120                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dea  Devosia ginsengisoli
Pathway
dea03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FPZ08_07895 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dea03400]
    FPZ08_07895 (ligD)
Enzymes [BR:dea01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FPZ08_07895 (ligD)
DNA repair and recombination proteins [BR:dea03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FPZ08_07895 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DNA_ligase_C DNA_ligase_OB_2 Orbi_VP1
Other DBs
NCBI-ProteinID: QDZ10683
UniProt: A0A5B8LRA9
LinkDB
Position
1582104..1584671
AA seq 855 aa
MASKADTLLRDYKAKRDFTKTQEPSGAGKGKSGGKAYRFVVQKHDATRLHYDFRIELDGV
LKSWAVTKGPSDNPEDKRLAVRVEDHPLAYGSFEGTIPEGQYGGGAVMLWDEGTWEPLGD
PHDGLDDGDLKMRLHGQRMKGEWVLVHMKGRDSKRKSGPRRENWLLIKHHDDYARDHEAL
TERFTRSVSSGRDLDGIARGLKPKKQTATPAEAVWNSDQAQDKPTTGKRQAKAARLPDFR
PPQLATLVSDVPEGPDWLFEMKYDGYRCLAAISGEAVRLYTRTGQDWTDKFKVIVPPLTR
ITKGSALIDGELCAFDENGRTDFSTLKDHLSNGGSLTYFAFDLIEQDGENLAKLPLTERK
ARLEKLLGKIEASSLVQFSPHVAGNGQRVFDTVCREGHEGIIAKQATAPYRSERTRSWLK
VKCGKRQEFVIAGWSPSTRKKTFASLLVGTWEDDKLIYRGRVGTGFSMDDAQALQRQLDS
RARKTDPFVNVPRPIAKSAHWVTPELVAEIGYTEFTPDGIMRHPSFLALREDKPAGDVAL
DKPDRSKSPAPSLDRAAGLAAAEAAGIKLTSPDRVVYPGQGVTKADLVAYYAAVAERMLP
YIENRPLSLLRCPQGRSKYCFFQKHDTGGFPDAMKSLMIAEKDGQKESYFYITDLAGLIA
GTQMNVLEWHLWGSRTKDVEKPERIIFDIDPDEGLGFEQVRAAAIDIRAELDAWGLESYP
LVSGGKGIHVIAPLRPTTEWPEVKSFCKTFAQRLADKFPDRFTANSRKASRKGKLFIDYL
RNERGATAIAPWSTRSREGAPVAVPVGWDELETIKAANQFGLADAIARAKRPDPWKGYFT
TSQSITKAMVSSVAG
NT seq 2568 nt   +upstreamnt  +downstreamnt
atggccagcaaagccgataccctgctgagggattacaaggccaagcgcgacttcacgaaa
acgcaggaaccttccggtgccggcaaggggaagtccggcggcaaagcctaccgtttcgtg
gtccaaaaacacgacgcgacccgcctgcactacgatttccgcatcgaactcgatggcgtg
ctcaagagctgggccgtgaccaaggggccgtccgacaatccggaagacaagcgcctcgcc
gtgcgggtggaagaccaccccctcgcctatggcagtttcgaaggcaccattcccgaaggc
cagtatggcggcggtgcggtaatgctatgggacgaaggcacctgggagccgctgggcgat
ccacatgacgggctggacgatggcgacctcaagatgcgactgcatggccagcgaatgaag
ggcgaatgggtgctggtccacatgaagggccgcgacagcaagcgcaaatccggcccacgc
cgtgagaactggctgctcatcaagcatcacgacgactatgccagggatcatgaagcgctg
accgagcgcttcacccgctccgtttcctccggccgtgacctcgatggcatcgcccgtggc
ctcaagccgaaaaagcagaccgcgacacccgccgaggccgtctggaattccgaccaagca
caagacaagccaaccacgggcaagcgccaggcaaaggccgctcgcctgcccgatttccgc
ccgccacaactggcgacgcttgtcagcgacgtgcccgaggggccggactggctgttcgag
atgaaatatgacggttaccgctgcctcgccgccatttcaggggaagccgtgcggctctac
acccgcaccgggcaggactggacggacaaattcaaggtgatcgttccgccgctgacccgt
atcaccaagggctcggccctgatcgacggcgaactctgcgccttcgatgagaatggccgt
accgacttctccaccctcaaggaccatctctccaatggtggatcgctgacctatttcgcc
ttcgacctgatcgagcaggatggcgagaacctcgcaaaactgccgctcaccgagcgcaag
gcgcggctcgaaaagctgcttggcaagatcgaagcctcctcgctggtgcaattctccccg
catgtggccggcaacggccagcgcgtcttcgacaccgtctgccgcgagggccatgagggc
attatcgccaagcaggcgacagcgccctatcgcagtgagcgcacgcgcagctggctcaag
gtcaaatgcggcaagcggcaggaattcgtcatcgccggctggtcgccctccacaaggaaa
aagaccttcgcttcgctactggtcggcacctgggaagatgacaagctgatctatcgcggc
cgcgtcggcacgggcttttccatggatgacgcccaggccctgcaacgccagctcgacagc
cgcgcacggaagaccgatcccttcgtcaatgttccgagacccatcgcgaaatcggcccat
tgggttacccccgaactggtggccgaaatcggctacaccgaattcacccccgacggcata
atgcgtcacccctctttcctcgcactacgcgaggacaagccggcgggagatgtcgccttg
gacaagcccgaccggtccaaaagccctgctccttcgctcgatcgcgcggccggcctggct
gccgccgaggcagccggcatcaagctcaccagtcccgatcgtgtggtctatcccggccag
ggcgtcaccaaggccgatctcgtcgcctactacgctgccgtggccgagcgcatgctgccc
tatatcgagaaccgtccgctgagcctgctgcgctgcccgcagggccgctcgaaatactgc
ttcttccagaaacacgataccggcggctttcccgatgccatgaagtccctgatgatcgcc
gagaaggatggccagaaggaaagctatttctacatcaccgacctcgccggcctcatcgcc
ggcacgcagatgaatgtacttgaatggcacctctggggttcacgcaccaaggatgttgaa
aaacccgagcgcatcatcttcgatatcgatcccgatgaggggctaggcttcgaacaggtg
cgcgccgccgccatcgatatccgcgccgagctggacgcctgggggctggaaagctatccg
ctggtcagcggcggcaagggtatccacgttatcgcgccactgcgcccgaccaccgaatgg
cctgaggtcaagagcttctgcaagaccttcgcgcaacgtcttgccgacaaattccccgac
cgcttcaccgccaattcgcgcaaggccagccgcaagggcaagctctttatcgactatctg
cgcaatgagcgcggcgcgaccgccatagcgccctggtcgacccgctcgcgcgagggcgct
ccggttgccgtgccggtcggttgggacgaattggagacgatcaaggccgccaaccaattc
ggcctggccgatgcgatcgcgcgggcgaagcggcccgatccctggaagggctatttcacc
accagccagtcgatcaccaaggcgatggtcagttccgtggccggttag

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