Devosia ginsengisoli: FPZ08_07895
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Entry
FPZ08_07895 CDS
T06120
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dea
Devosia ginsengisoli
Pathway
dea03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FPZ08_07895 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dea03400
]
FPZ08_07895 (ligD)
Enzymes [BR:
dea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FPZ08_07895 (ligD)
DNA repair and recombination proteins [BR:
dea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FPZ08_07895 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_C
DNA_ligase_OB_2
Orbi_VP1
Motif
Other DBs
NCBI-ProteinID:
QDZ10683
UniProt:
A0A5B8LRA9
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Position
1582104..1584671
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AA seq
855 aa
AA seq
DB search
MASKADTLLRDYKAKRDFTKTQEPSGAGKGKSGGKAYRFVVQKHDATRLHYDFRIELDGV
LKSWAVTKGPSDNPEDKRLAVRVEDHPLAYGSFEGTIPEGQYGGGAVMLWDEGTWEPLGD
PHDGLDDGDLKMRLHGQRMKGEWVLVHMKGRDSKRKSGPRRENWLLIKHHDDYARDHEAL
TERFTRSVSSGRDLDGIARGLKPKKQTATPAEAVWNSDQAQDKPTTGKRQAKAARLPDFR
PPQLATLVSDVPEGPDWLFEMKYDGYRCLAAISGEAVRLYTRTGQDWTDKFKVIVPPLTR
ITKGSALIDGELCAFDENGRTDFSTLKDHLSNGGSLTYFAFDLIEQDGENLAKLPLTERK
ARLEKLLGKIEASSLVQFSPHVAGNGQRVFDTVCREGHEGIIAKQATAPYRSERTRSWLK
VKCGKRQEFVIAGWSPSTRKKTFASLLVGTWEDDKLIYRGRVGTGFSMDDAQALQRQLDS
RARKTDPFVNVPRPIAKSAHWVTPELVAEIGYTEFTPDGIMRHPSFLALREDKPAGDVAL
DKPDRSKSPAPSLDRAAGLAAAEAAGIKLTSPDRVVYPGQGVTKADLVAYYAAVAERMLP
YIENRPLSLLRCPQGRSKYCFFQKHDTGGFPDAMKSLMIAEKDGQKESYFYITDLAGLIA
GTQMNVLEWHLWGSRTKDVEKPERIIFDIDPDEGLGFEQVRAAAIDIRAELDAWGLESYP
LVSGGKGIHVIAPLRPTTEWPEVKSFCKTFAQRLADKFPDRFTANSRKASRKGKLFIDYL
RNERGATAIAPWSTRSREGAPVAVPVGWDELETIKAANQFGLADAIARAKRPDPWKGYFT
TSQSITKAMVSSVAG
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaaagccgataccctgctgagggattacaaggccaagcgcgacttcacgaaa
acgcaggaaccttccggtgccggcaaggggaagtccggcggcaaagcctaccgtttcgtg
gtccaaaaacacgacgcgacccgcctgcactacgatttccgcatcgaactcgatggcgtg
ctcaagagctgggccgtgaccaaggggccgtccgacaatccggaagacaagcgcctcgcc
gtgcgggtggaagaccaccccctcgcctatggcagtttcgaaggcaccattcccgaaggc
cagtatggcggcggtgcggtaatgctatgggacgaaggcacctgggagccgctgggcgat
ccacatgacgggctggacgatggcgacctcaagatgcgactgcatggccagcgaatgaag
ggcgaatgggtgctggtccacatgaagggccgcgacagcaagcgcaaatccggcccacgc
cgtgagaactggctgctcatcaagcatcacgacgactatgccagggatcatgaagcgctg
accgagcgcttcacccgctccgtttcctccggccgtgacctcgatggcatcgcccgtggc
ctcaagccgaaaaagcagaccgcgacacccgccgaggccgtctggaattccgaccaagca
caagacaagccaaccacgggcaagcgccaggcaaaggccgctcgcctgcccgatttccgc
ccgccacaactggcgacgcttgtcagcgacgtgcccgaggggccggactggctgttcgag
atgaaatatgacggttaccgctgcctcgccgccatttcaggggaagccgtgcggctctac
acccgcaccgggcaggactggacggacaaattcaaggtgatcgttccgccgctgacccgt
atcaccaagggctcggccctgatcgacggcgaactctgcgccttcgatgagaatggccgt
accgacttctccaccctcaaggaccatctctccaatggtggatcgctgacctatttcgcc
ttcgacctgatcgagcaggatggcgagaacctcgcaaaactgccgctcaccgagcgcaag
gcgcggctcgaaaagctgcttggcaagatcgaagcctcctcgctggtgcaattctccccg
catgtggccggcaacggccagcgcgtcttcgacaccgtctgccgcgagggccatgagggc
attatcgccaagcaggcgacagcgccctatcgcagtgagcgcacgcgcagctggctcaag
gtcaaatgcggcaagcggcaggaattcgtcatcgccggctggtcgccctccacaaggaaa
aagaccttcgcttcgctactggtcggcacctgggaagatgacaagctgatctatcgcggc
cgcgtcggcacgggcttttccatggatgacgcccaggccctgcaacgccagctcgacagc
cgcgcacggaagaccgatcccttcgtcaatgttccgagacccatcgcgaaatcggcccat
tgggttacccccgaactggtggccgaaatcggctacaccgaattcacccccgacggcata
atgcgtcacccctctttcctcgcactacgcgaggacaagccggcgggagatgtcgccttg
gacaagcccgaccggtccaaaagccctgctccttcgctcgatcgcgcggccggcctggct
gccgccgaggcagccggcatcaagctcaccagtcccgatcgtgtggtctatcccggccag
ggcgtcaccaaggccgatctcgtcgcctactacgctgccgtggccgagcgcatgctgccc
tatatcgagaaccgtccgctgagcctgctgcgctgcccgcagggccgctcgaaatactgc
ttcttccagaaacacgataccggcggctttcccgatgccatgaagtccctgatgatcgcc
gagaaggatggccagaaggaaagctatttctacatcaccgacctcgccggcctcatcgcc
ggcacgcagatgaatgtacttgaatggcacctctggggttcacgcaccaaggatgttgaa
aaacccgagcgcatcatcttcgatatcgatcccgatgaggggctaggcttcgaacaggtg
cgcgccgccgccatcgatatccgcgccgagctggacgcctgggggctggaaagctatccg
ctggtcagcggcggcaagggtatccacgttatcgcgccactgcgcccgaccaccgaatgg
cctgaggtcaagagcttctgcaagaccttcgcgcaacgtcttgccgacaaattccccgac
cgcttcaccgccaattcgcgcaaggccagccgcaagggcaagctctttatcgactatctg
cgcaatgagcgcggcgcgaccgccatagcgccctggtcgacccgctcgcgcgagggcgct
ccggttgccgtgccggtcggttgggacgaattggagacgatcaaggccgccaaccaattc
ggcctggccgatgcgatcgcgcgggcgaagcggcccgatccctggaagggctatttcacc
accagccagtcgatcaccaaggcgatggtcagttccgtggccggttag
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