Desulfovibrio sp. G11: CNY67_09875
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Entry
CNY67_09875 CDS
T05183
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
def
Desulfovibrio sp. G11
Pathway
def03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
def00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNY67_09875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
def03019
]
CNY67_09875
Messenger RNA biogenesis [BR:
def03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNY67_09875
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
ATD81648
UniProt:
A0A807ZJT4
LinkDB
All DBs
Position
complement(2209302..2210960)
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AA seq
552 aa
AA seq
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MKEPYLTITPLGGLGEIGLNCQLWETAGGVVMVDCGLMFPDDAHLGVDVVIPHFGAVSAI
KDKLLGIVLTHGHEDHIGALPWLVPELKGTRIYGSRFTLALVEHKLREREILDWVELCPV
DARTVLPLGDLTFHFFPVCHSIPEGFGLGVETPVGRVVHSGDFKIDPHPLDGTGTDLDVF
SNFAGPQGARLLLSDSTNVMRDGRSLTEREVKDSLEKIFSSAEGRIVITLFSSHIQRIQE
VFDLAREYGRTVVISGKSLANNIEMARDLGFAKLPPSFFNAHNGVPDLPDNQIVLVVTGA
QGEPLSALSRMVLGGHRQLEVRKGDTVVMSSRMIPGNAKAVAKLINEMYRIGAEVLYESV
HAIHASGHAQREELREMFEAVRPELFVPVHGEYQHLVKHGRLAVECGVKEENVVLLEDGQ
PLTLLEDSFRLEQKVPVECTLVDGKGVGDVGYAVLRERRILGDEGMVIVVLVVDSETGSV
LHGPEMISKGFVFEQHYSHLLEDAKCLVLDEIEAARPGQLNRMQEGIRSSLRRFFRRVLE
RDPVVVPIISEV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaccctaccttaccatcacgcccctggggggccttggagaaatcggcctcaac
tgccaattgtgggaaaccgccggcggcgtggtcatggtggactgtggactcatgttcccc
gacgacgcccatctgggcgtggacgtggtcatcccgcattttggcgcggtaagcgccatc
aaagacaaactgctcggcatcgtgctcacccacggccatgaagaccatatcggggccttg
ccctggcttgtgcccgagcttaaaggtacacgcatctacggttcgcgttttacccttgcc
ctggtggagcacaagctgcgtgagcgggaaattcttgactgggtggaactgtgcccggtg
gacgcccggaccgttctgcccctgggcgatctgacgtttcacttttttccggtctgtcat
tccattcccgaaggcttcggactgggggtggaaacccctgtgggccgcgtcgtgcacagc
ggcgacttcaagattgacccgcatcccctggatggtacaggcacggaccttgatgtcttc
agcaactttgcaggcccgcagggcgcgcgtctgttactttcagactccaccaacgtcatg
cgtgacggccgctcccttacggaaagggaagtgaaggactcgctggaaaagattttttcc
agcgcagaaggccgtatcgttattacacttttttcgagccatatccaaagaatacaggaa
gtgttcgaccttgcacgcgaatacgggcgcacggtcgtcataagcggcaaatcactggcc
aataatatcgagatggcccgggatctgggtttcgccaaattgccgccctctttttttaat
gcgcataacggtgttcccgatctgcccgacaaccagatcgttctggtggtcacaggggcg
cagggcgaacctttgtcggccctgtcgcgcatggtgctcggcggtcacaggcagcttgaa
gtgcgcaagggcgacacagtggtcatgagttcgcgcatgatcccgggcaatgccaaggcc
gtagccaagcttattaacgaaatgtaccgcatcggcgcggaagtgctgtatgaaagcgtg
catgccattcatgcttcggggcatgcccagcgcgaagaactgcgtgaaatgttcgaggcc
gtgaggccggaactttttgtgccggtacacggcgaataccagcatctggtcaagcacggg
cgtctggccgtggagtgtggggtaaaagaagaaaacgtcgttctgctggaagacgggcag
cccctgaccctgctggaagattctttcaggcttgagcagaaagtgcctgtggagtgcacc
cttgtggacggcaagggcgttggcgacgtgggctatgccgtactgcgcgagcgccggatc
cttggcgacgagggtatggttatcgtggtgctggtggtagactctgaaacgggcagtgta
ctgcacgggccggaaatgatctccaagggctttgtgttcgagcagcattacagccatctg
ctcgaagatgccaagtgccttgtgctggatgagatagaggccgctcgcccggggcagctc
aatcgcatgcaggagggcatccgatcttcgttgcggcgttttttccgccgtgtgctggag
cgcgaccccgtggttgtacccatcatcagcgaagtttaa
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