Desulfuromonas sp. AOP6: AOP6_1105
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Entry
AOP6_1105 CDS
T08366
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dep
Desulfuromonas sp. AOP6
Brite
KEGG Orthology (KO) [BR:
dep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dep03019
]
AOP6_1105 (hrpB)
Enzymes [BR:
dep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AOP6_1105 (hrpB)
Messenger RNA biogenesis [BR:
dep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AOP6_1105 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
HA2_N
DEAD
Flavi_DEAD
ResIII
HA2_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BCA79318
LinkDB
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Position
1173725..1176235
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AA seq
836 aa
AA seq
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MSTSLPVDSLLPDLRRALRDAGAVVLQAPPGAGKTTRVPPALLDEPWLQGRRILMLEPRR
LAATNAARYMASRQGEEVGKTVGYTIRFDRKVTAQTRIEVVTEGILTRRLQSDPLLEDVG
LIIFDEFHERNLHSDLALALCRDAQMGLRDDLKILVMSATLDAGPVAGLLGGAPLLTSEG
RSYPVDVRYLPRTPQGAVADYTVAAVRRALSETAGDVLVFLPGAREIRRCQQRLQADGSL
AAVEICPLYAGLPFAAQEKAILPGKGRRVVLATNIAETSLTIEGVRVVVDSGLERRPRFD
AAAGLSRLDTVNISVASATQRAGRAGRLAPGICYRLWTEASHNSLLPFAPPEIRVADLSG
LALELALWGVPDPGQLAWLDPPPAGALKAARELLVELGALDDKGRVTEEGRRLARFPVEV
RLARLLLTGEKLGVWPLACDLAALLSERDLLASTPGAAMASDSDLLDRLEVLARWREHPH
AEDTERRGVAAVERTARQLRRLGPQQDRVEAPDLETVGRLLIAAFPDRIACERQEGSGRY
LLANGQGVRLSPRSRVHGQRWLVAVEVTSGNQGEGEIHLASALPGEIIEADFRARLPWQR
RVEWDARQQRVQAVEEQRLGALVLGSRPIKASEEEMAGAVLAGVRQLGLECLSWSDADRQ
LAARVRLLARVFPEENWPAMDEESLLESLESWLAPWLGRVRTRAELARVDVGAALAGLLD
WPRRQRLEQLAPTHLLVPSGSRLAIDYVAGDQPVLAVKLQELFGLAETPRLAGKRVPLLL
HLLSPARRPIQVTTDLKNFWDSVYPEVKKELKGRYPKHPWPDDPWTAAPTRHTRRR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttccctgcccgtcgacagtctgctgcctgacctgcgccgtgccctgcgtgat
gccggcgccgtggtgctgcaggccccccccggcgccggcaagacgacgcgtgtgccgccg
gctttgctcgacgagccctggttgcaggggcgccgcatcctcatgctggaaccgcggcgg
ctggcggcgacgaacgccgcccgctacatggcctcccgtcagggggaagaggtggggaag
acagtgggctacaccattcggtttgatcgcaaggtcacggcgcagacccgcatcgaggtg
gtcaccgagggcattctgacccgccggctgcagagcgatcccctgctggaagatgtgggg
ctgatcatcttcgacgaattccacgaacgcaaccttcattctgatctggctctggcctta
tgccgcgacgcccagatgggattgcgcgacgatctcaagattctggtcatgtccgctacc
ctcgacgccggtccggtggccgggcttctgggcggggcgccgcttctcacgagcgaggga
cgcagttatcctgtcgatgtgcgttatctgccgaggacgcctcagggagccgtggccgac
tatacggtggcggccgtgcggcgggcgcttagcgaaacggccggagacgtcctcgtcttt
ctgcccggggccagggagatacgccgctgtcagcagcggttgcaggctgatggcagtctg
gccgccgttgaaatctgccccctctacgcggggctcccttttgcggcccaggaaaaggcc
atcctccccggcaaggggcggcgggtggtgctggcgaccaacatcgccgaaacgagcctg
actatcgagggggtcagggtcgtggtggacagcggtctggagcgccgcccccgcttcgat
gcggccgccgggctttcccgcctcgacacggtgaatatttcggtggccagcgctacgcaa
cgggcgggacgggccggccgtctggcgccgggtatctgttaccggctgtggacggaagcc
tcccacaacagcctgttgcccttcgcgccaccggaaatccgcgtggccgacctttcgggc
ctggctttggagctggctctgtggggggtgcccgaccccggtcagctggcctggctggat
ccaccccccgccggggcgctcaaggcggcccgcgagctgctcgtggagctgggggcgctg
gacgacaaaggacgggtgacggaggaaggtagacgcctggcccgcttccccgtcgaggtg
cgtctggcccgactgctgctgaccggtgagaagctgggcgtctggccgctggcctgcgat
ctggcggcgctgctctcggaacgcgacctgttggcgtcgacccccggcgcggccatggcc
agcgacagtgatctccttgaccgccttgaggtgttggcgcgctggcgggaacatccgcat
gctgaggacaccgagagacggggcgttgccgccgttgaacgtaccgcccggcagctgcgc
cgcttgggtccacaacaagacagggtagaggcgcctgacctggagacggtggggcgtctg
ctgatcgccgctttccccgaccgtattgcctgcgaacggcaagaggggagcggtcgttat
ctgctggccaacggccagggcgtgcgcttgtcgccacgtagccgcgtgcacgggcagcgc
tggctcgtggccgtggaggtgacgtcaggaaatcagggggaaggggaaatccatctggcc
agcgccctgcctggggaaatcatcgaggcggatttccgggccaggttgccctggcagcgg
cgggtagagtgggatgcccgccagcagcgggttcaggccgtcgaggaacagcgtcttggc
gccctggtgctgggttcacggcccatcaaggcatcggaggaagaaatggctggggcggta
ctggccggggttcgccagctggggctggaatgtctgtcctggtcggatgccgaccggcag
ctcgcggctcgtgttcgcttgctggcgcgggtgtttccggaagaaaattggcccgccatg
gacgaagagagcctgctcgaatccctggagagctggctggctccctggctggggagggtt
cgaacccgggccgagctggcccgggtcgatgtaggggcggctttggcaggtctgctggac
tggccacggcgccagcgtctggagcagctggcgcccactcaccttctggtgccgagcggg
tcgcggttggctattgattatgtcgccggcgaccagcccgtgcttgccgttaaactgcag
gaacttttcggactggcggaaacgcctcgccttgccggcaagcgggtgcctctgctgctt
cacctgctgtcaccggccaggcgaccgattcaggtaactaccgatttgaaaaatttctgg
gacagcgtctatcccgaggtcaaaaaagagctcaagggacgctatcccaaacatccctgg
cccgatgatccctggacggccgctccgacccgccatacccgccggcgctga
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