Devosia sp. H5989: XM25_12405
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Entry
XM25_12405 CDS
T04003
Name
(GenBank) hypothetical protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
deq
Devosia sp. H5989
Pathway
deq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XM25_12405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deq03019
]
XM25_12405
Enzymes [BR:
deq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
XM25_12405
Messenger RNA biogenesis [BR:
deq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XM25_12405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
tRNA_NucTran2_2
Motif
Other DBs
NCBI-ProteinID:
AKR56582
LinkDB
All DBs
Position
complement(2530162..2531358)
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AA seq
398 aa
AA seq
DB search
MVSQEEARARLRNAPWLAEPELQRILVALDGHHGRTRAVGGAVRDTLMGHGRTSTDIDLA
TELTPDEVVRRAKAAGIASYPTGIEHGTVTLKAGHHLAEVTTLREDVETDGRHAVVRFGI
DWRHDAERRDFTLNALYCAANGTLFDPLDGLGDCLEARIRFIGDPDRRIAEDRLRVYRFF
RFSASHGRQHFDPEGLEACRRAAGTLSRLSAERVGAEITRMLALAKVARTLEEMTRVGVL
ELPQAKPAQLAAYEALSPFPARTGRLAIIMQGSDPQAIQDRWRLSNDLVAQAEATLKAAG
LINLGALQEAAYRYPRHVEDAVAVAAALGHRDGEEVAENRQRLNALVVPKFPLSGADLLR
KGMLPGKALGIELTRLERLWIESGFTLDRDALLASVRG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggtgagccaggaagaggcgcgcgccaggctgcgaaacgcgccatggctggccgagccg
gaactgcaacgcatcctggtggcgctcgatgggcaccacgggcgcacccgcgccgtgggc
ggggcggtgcgcgacacgctcatggggcatggccgcaccagcaccgacatcgacctggcc
acggagctgacgcccgacgaggtcgtccgccgggccaaggccgcgggcatcgcgtcctat
cccaccggaatcgagcatggcacggtcacgctcaaggcggggcatcaccttgccgaagtc
accacgttacgcgaggacgtcgagaccgacgggcgccatgccgtggtgcgtttcggaatc
gactggcgccacgacgccgagcggcgtgactttaccctaaacgcgctttactgcgcggcg
aacggtacgctgttcgacccgctggacgggctgggcgattgcctcgaagcccgcatccgc
ttcatcggtgatccggacaggcgcatcgccgaggaccggctgcgcgtctaccgtttcttc
cgcttctcggccagccacggccggcagcatttcgacccggaagggctcgaggcttgccgc
cgcgccgccgggacgctgtcccggctttcagccgagcgggtgggcgccgagatcacgcgc
atgctggcgctggcaaaggtcgcgcgcacgctcgaggagatgacgcgggtcggcgtgctc
gaactgccccaggccaagcccgcgcaactggcggcctatgaggcgctgtcgccctttccg
gcgcggaccgggcggttggcgatcatcatgcaggggagcgatccgcaggcgatccaggat
cgctggcgtctctccaacgatctcgttgcgcaggccgaggcaacgctcaaggcggcgggg
ctgatcaacctgggtgcactccaggaagcggcctatcgctatccgcgtcatgtcgaggat
gcggtggcggtcgcggcggcgcttgggcatcgcgacggcgaggaagtggccgagaaccgg
cagcggctcaatgcgctggtcgtgccgaagtttccgctctcgggagcggatctcctgcgt
aagggcatgctccccggcaaggcgctgggaattgaactcacccggctcgagcgcctctgg
atcgagagcgggttcaccctcgatcgcgacgcgctgctggcttccgtccggggctag
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